BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0007.p (639 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313947|ref|YP_003778039.1| cell division protein FtsI [Her... 1039 0.0 gi|300309672|ref|YP_003773764.1| cell division FtsI protein/peni... 132 7e-32 >gi|300313947|ref|YP_003778039.1| cell division protein FtsI [Herbaspirillum seropedicae SmR1] Length = 656 Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/625 (80%), Positives = 574/625 (91%), Gaps = 6/625 (0%) Query: 1 MTEFKNTEHELKLFRLRLFAVAVLVLVCFSLLMARFVWLQIVRHDAYAAQAEENRISVVP 60 MTEFKNT HEL+LFR+RL AV+VLVLVCFSLL+ARF+WLQ+VRHDAYAAQAEENRISVVP Sbjct: 1 MTEFKNTAHELRLFRIRLLAVSVLVLVCFSLLLARFLWLQVVRHDAYAAQAEENRISVVP 60 Query: 61 IVPNRGLILDRNGVVLARNYSAYTLEITPSKITGSLDDLVDQLSPLVDIQPKDRRRFRKL 120 IVPNRGLILDRNGVVLARNYSAYTLEITPSKI ++DDL+D+L LV+IQP+DRRRFR+L Sbjct: 61 IVPNRGLILDRNGVVLARNYSAYTLEITPSKIRTNIDDLIDELGTLVEIQPRDRRRFRRL 120 Query: 121 LEESKNFESLPIRTRLTDEEVARFTAQRYRFPGVDIQARLFRQYPYGKTAAHVIGYIGRI 180 EESKNFES+PIRTRLTDEEVA+FTAQRYRFPGV++QARLFRQYPYGKTAAHVIGYIGRI Sbjct: 121 QEESKNFESVPIRTRLTDEEVAKFTAQRYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRI 180 Query: 181 SQRDADRISDSDDEANYNGTDYIGKEGLEKSYETQLHGTTGYEEVEISAGGRAVRTLSRT 240 SQRDA+RI+DSDDEANYNGTDYIGKEGLEKSYE+QLHGTTGYEEVEISA GRAVR+LSRT Sbjct: 181 SQRDAERIADSDDEANYNGTDYIGKEGLEKSYESQLHGTTGYEEVEISASGRAVRSLSRT 240 Query: 241 PASPGQNLILSIDIELQKVIEEAFGDRKGALVAIDPATGDILAYVSQPSFDPNVFVEGID 300 PA+PG+NLILSIDIELQKV+EEAFGD+KGALVAI+PATGDILAYVSQPS+DPN+FVEGID Sbjct: 241 PATPGKNLILSIDIELQKVVEEAFGDQKGALVAINPATGDILAYVSQPSYDPNLFVEGID 300 Query: 301 QQTWDELNNSPDRPLINRPLSGTYPPGSTYKPFMALAALELGKRKPTDSIRDPGFFWLGN 360 QQ+WDELN SPDRPL+NRPLSG Y PGSTYKPFMALAALELGKR+P D+IRDPG+F LGN Sbjct: 301 QQSWDELNKSPDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIRDPGYFILGN 360 Query: 361 HKFRDDKEGGHGVVDMYRSIVVSCDTYYYMLANDLGVDPLX------GFGQVTGIDLEHE 414 H+FRDDKEGGHGVVDMYRS+VVSCDTYYYMLAND+GV+ + GFGQ+TGIDLEHE Sbjct: 361 HRFRDDKEGGHGVVDMYRSVVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHE 420 Query: 415 RKGLLPSTTWKRNAYRKPEQRKWYAGETISLGIGQGYNAFTPIQMAHATATLANNGVVMK 474 ++G+LPST WKR A+RKPEQ++W AG+T+SLGIGQGYN+FTP+Q+A ATA LANNGVVMK Sbjct: 421 KRGILPSTEWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMK 480 Query: 475 PHLVKMIEDGVTHDRTVTVPKESYRIPLKQENIDVIKQAMVGVNKEGTGARAFAGAEYTS 534 PHLVK++EDGVTH+RT TVPKESYRIP+KQENID IK+AMVGV KEGTGA AF GA Y S Sbjct: 481 PHLVKIVEDGVTHERTETVPKESYRIPMKQENIDFIKRAMVGVVKEGTGAAAFRGAPYES 540 Query: 535 AGKSGTAQVVSIKKNEKYDAKRLATHLLDNALFTAFAPADKPRIALSVIVENGGWGAEAA 594 GK+GTAQVV+I KN+KYD+K+L+ DN L+ FAPAD PRIA++ +VENGGWGA A Sbjct: 541 GGKTGTAQVVNIAKNQKYDSKKLSRIYHDNGLYIGFAPADAPRIAIAAVVENGGWGAGVA 600 Query: 595 APLARKAIDFYLLGKRPGDKAKAAA 619 APL RKA+D+++LGKRP + K+ A Sbjct: 601 APLVRKAMDYFMLGKRPNEPIKSIA 625 >gi|300309672|ref|YP_003773764.1| cell division FtsI protein/penicillin-binding protein 2 [Herbaspirillum seropedicae SmR1] Length = 592 Score = 132 bits (333), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 151/601 (25%), Positives = 249/601 (41%), Gaps = 85/601 (14%) Query: 10 ELKLFRLRLFAVAVLVLVCFSLLMARFVWLQIVRHDAYAAQAEENRISVVPIVPNRGLIL 69 ++KL R V ++ V F L+ R +WLQ V D Q + + RG I Sbjct: 30 QVKLPAWRSRFVLFVLFVAFVALVLRALWLQGVSTDFLQKQGASRYARTLELPATRGKIT 89 Query: 70 DRNGVVLARNYSAYTLEITPSKITGSLDDLVDQLSPLVDIQPKDRRRFRKLLEESKNFES 129 DRNG VLA + + P + + D + QL+ L+++ D RK L+ ++F Sbjct: 90 DRNGQVLASSVPVKAIWAIPEDVQAAPKDKLVQLAKLLEMSDAD---LRKKLDSDRSFVY 146 Query: 130 LPIRTRLTDEEVARFTAQRYRFPGVDIQARLFRQYPYGKTAAHVIGYIGRISQRDADRIS 189 L R +++ A + PG++ + R YP G+ AHV+G+ I Sbjct: 147 L---KRQVEQDTADKIV-KLGIPGIETRKEYKRFYPEGEVMAHVVGF---------TNIE 193 Query: 190 DSDDEANYNGTDYIGKEGLEKSYETQLHGTTGYEEVEISAGGRAVRTLS--RTPASPGQN 247 D+ G++G+E + + L G TG V GR V + R P G++ Sbjct: 194 DA------------GQDGMELAAQKTLAGVTGSRRVIKDRLGRVVEDIESIREPHD-GRD 240 Query: 248 LILSIDIELQ-------KVIEEAFGDRKGALVAIDPATGDILAYVSQPSFDPNVFVEGID 300 L LSID ++Q K E F + G ++ +D TG++LA + P+++PN D Sbjct: 241 LTLSIDSKIQYIAFTQLKEAVEKFKAKAGGIIVVDAKTGEVLALANLPTYNPN------D 294 Query: 301 QQTWDELNNSPDRPLINRPLSGTYPPGSTYKPFMALAALELGKRKPTDSIRD-PGFFWLG 359 + L NR ++ T+ PGST KPF AL+ + P+ + PG +G Sbjct: 295 RSVLTGAQ------LRNRVVTDTFEPGSTMKPFTVALALDTHRVTPSTVFQTAPGKMTIG 348 Query: 360 NHKFRDDKEGGHGVVDMYRSIVVSCDTYYYMLANDLGVDPLXGFGQVTGIDLEHERKGLL 419 D HG + + + I S + +A LG+ P + T + + K Sbjct: 349 TATIGDSH--AHGPLTVAQIIEKSSNIGTAKIA--LGMPPEEMWEMFTTVGFGQQPKFGF 404 Query: 420 PSTTWKRNAYRKPEQRKWYAGETISLGIGQGYNAFTPIQMAHATATLANNGVVMKPHLVK 479 P A R + W E ++ G G + + IQ+AHA A NG ++ K Sbjct: 405 PGAV----AGRVRPYKSWRPIEQATMSYGHGISV-SLIQLAHAYLIFARNGDIIPLSFTK 459 Query: 480 MIEDGVTHDRTVTVPKESYRIPLKQENIDVIKQAMVGVNKEGTGARAFAGAEYTSAGKSG 539 + + + R+ + + + V GT +A Y GK+G Sbjct: 460 VTDSPIGQ-----------RVISADTALQMRRMLETVVAPGGTAPQAQVPG-YRVGGKTG 507 Query: 540 TAQVVSIKKNEKYDAKRLATHLLDNALFTAFAPADKPRIALSVIV---ENGGWGAEAAAP 596 TA + + KY K +A+ F+ AP PR+ +SV++ + +G A P Sbjct: 508 TAYKI---EGGKYVRKYVAS-------FSGIAPMSDPRLIISVMIDEPQGQHYGGPVAGP 557 Query: 597 L 597 + Sbjct: 558 V 558 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,017,227 Number of extensions: 89471 Number of successful extensions: 241 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 234 Number of HSP's successfully gapped: 2 Length of query: 639 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 548 Effective length of database: 1,188,985 Effective search space: 651563780 Effective search space used: 651563780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)