BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0004.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313944|ref|YP_003778036.1| cell morphogenesis actin-like A...   250   1e-67
gi|300313945|ref|YP_003778037.1| rod shape-determining MreC tran...   163   2e-41

>gi|300313944|ref|YP_003778036.1| cell morphogenesis actin-like
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  250 bits (638), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 56  DIGGGTTEVGIISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGS 115
           DIGGGTTEVGIISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGS
Sbjct: 166 DIGGGTTEVGIISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGS 225

Query: 116 AFPGSEVKEMEVKGRNLSEGIPRSFTISSNEILEALTDPLNNIVSAVKNALEQTPPELGA 175
           AFPGSEVKEMEVKGRNLSEGIPRSFTISSNEILEALTDPLNNIVSAVKNALEQTPPELGA
Sbjct: 226 AFPGSEVKEMEVKGRNLSEGIPRSFTISSNEILEALTDPLNNIVSAVKNALEQTPPELGA 285

Query: 176 DIA 178
           DIA
Sbjct: 286 DIA 288


>gi|300313945|ref|YP_003778037.1| rod shape-determining MreC
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score =  163 bits (412), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 91/114 (79%)

Query: 184 LSMVRQAVGTVLYPFQVVAMVPRDAAYKVGDYFNSLTALQKENDALRRQQAVNAQLMQQE 243
           L  +RQA+ T LYPFQ VAM+PRDAA  + D   +L  LQKEN  LR+QQ VNAQL+QQE
Sbjct: 56  LGTIRQALATALYPFQTVAMMPRDAATSITDSLVALNTLQKENRELRQQQIVNAQLLQQE 115

Query: 244 RQMAAENIQLRKLLSMQQRIANRSVVGEILYDARDPFTRKIILNRGSQQGVAPG 297
           R +AAEN QLRKLL MQQ++  +S+VGEILYDARDPFTRKIILNRGSQQGV  G
Sbjct: 116 RLLAAENAQLRKLLEMQQKVPVKSIVGEILYDARDPFTRKIILNRGSQQGVEAG 169


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 781,501
Number of extensions: 28462
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)