BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0003.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313944|ref|YP_003778036.1| cell morphogenesis actin-like A...   263   7e-72

>gi|300313944|ref|YP_003778036.1| cell morphogenesis actin-like
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  263 bits (672), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 139/186 (74%), Positives = 142/186 (76%), Gaps = 7/186 (3%)

Query: 1   MFGFLRSYFSNDLAIDLGTANTLIYVRGQGIVLDEPSVVAIRQQGGPNGKKTIQAVGKEA 60
           MFGFLRSYFSNDLAIDLGTANTLIY RG GIVLDEPSVVAIRQQGGPNGKKTIQAVGKEA
Sbjct: 1   MFGFLRSYFSNDLAIDLGTANTLIYARGHGIVLDEPSVVAIRQQGGPNGKKTIQAVGKEA 60

Query: 61  KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHDSKLFRPSPRIIICVPCGST 120
           KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHDSKLFRPSPRIIICVPCGST
Sbjct: 61  KQMLGKVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHDSKLFRPSPRIIICVPCGST 120

Query: 121 QVERRAIRXIGRRHRRKGHDADRWRRAAARPGPSADGRNRPAGD-RGGRSADLRGARFRH 179
           QVERRAI     R    G  A +       P  +A G   P  D  G    D+ G     
Sbjct: 121 QVERRAI-----RESALGAGASQV-YLIEEPMAAAIGSGLPVSDATGSMVVDIGGGTTEV 174

Query: 180 GARSHG 185
           G  S G
Sbjct: 175 GIISLG 180


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 581,038
Number of extensions: 21046
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)