BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0001.p
         (126 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313942|ref|YP_003778034.1| Asp-tRNAAsn/Glu-tRNAGln amidotr...   151   1e-38
gi|300311728|ref|YP_003775820.1| indole acetamide hydrolase [Her...    54   4e-09

>gi|300313942|ref|YP_003778034.1| Asp-tRNAAsn/Glu-tRNAGln
           amidotransferase subunit A [Herbaspirillum seropedicae
           SmR1]
          Length = 488

 Score =  151 bits (382), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/87 (80%), Positives = 78/87 (89%)

Query: 1   LQQAAQADRRIAADDVTALTGIPIAHKDLFVTRGWRTTAGSKMLENYVSPFDATVVEQFN 60
           L QA  AD R++ ++   LTG+PIAHKD+FVTRGWRTTAGS+ML+NYVSPFDATVVEQFN
Sbjct: 48  LAQAKVADSRLSDNNAGQLTGVPIAHKDIFVTRGWRTTAGSRMLDNYVSPFDATVVEQFN 107

Query: 61  AAGTVTLGKLNCDEFAMGSGNENSYFG 87
           AAG VTLGKLNCDEFAMGSGNENSYFG
Sbjct: 108 AAGMVTLGKLNCDEFAMGSGNENSYFG 134


>gi|300311728|ref|YP_003775820.1| indole acetamide hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 468

 Score = 53.9 bits (128), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 36/69 (52%)

Query: 19  LTGIPIAHKDLFVTRGWRTTAGSKMLENYVSPFDATVVEQFNAAGTVTLGKLNCDEFAMG 78
           L+GIPIA KD     G  +TAG+  L N V    ATVVE    AG +  GK N  E A G
Sbjct: 66  LSGIPIAIKDNIDVAGIASTAGTAALRNNVPQRHATVVEYLFGAGALHAGKANMHELAFG 125

Query: 79  SGNENSYFG 87
             N N  FG
Sbjct: 126 ITNNNGVFG 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 334,341
Number of extensions: 12215
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 2
Length of query: 126
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,264,745
Effective search space: 64501995
Effective search space used: 64501995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)