BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0020.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A...    63   3e-11

>gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 345

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 16/187 (8%)

Query: 6   AVNAQAQAREKVTIAIGTDVLDASQVNNTSLPIYTK----CWENAGLDVTLQP-TNSTTA 60
           +  AQA  + KV+IA+G   L         LP+        +++ GL V +        A
Sbjct: 25  SAGAQALEKPKVSIAVGGKNL------FYYLPLTIAEQLGYFKDEGLQVEISDFAGGAKA 78

Query: 61  MQAVLTGQADMVNMGPAAAIIARTKGAPIKAVYLNMRHNFQFPVVLDSSPV---KTLADF 117
           +QA++ G AD+V+      I  + K  PI A  L  R   Q  + +++  +   KT+AD 
Sbjct: 79  LQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAP-QIVLAVNNKTMPNYKTVADL 137

Query: 118 KGKTIGVLSYGSQMVQIFKGMLTEAGLNPDKDVTFVETGSGAQAVTALSKGRVDIWGTWD 177
           KGK IGV + GS    +   +L +AGL P  DV+F+  G+ A A++A+  G++D     D
Sbjct: 138 KGKKIGVTAPGSSTSVMASYVLAKAGLKPS-DVSFIGVGAAAGAISAVRSGQIDAIANLD 196

Query: 178 SQIATAE 184
             I+  E
Sbjct: 197 PVISMLE 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 971,177
Number of extensions: 39197
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)