BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0019.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313769|ref|YP_003777861.1| transcription regulator protein... 139 2e-34 gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 120 8e-29 gi|300311443|ref|YP_003775535.1| LysR family transcription regul... 120 1e-28 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 107 6e-25 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 103 1e-23 >gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 123/229 (53%), Gaps = 2/229 (0%) Query: 1 MLVEAEAAQEAVERNRAEPQGTVRLTCPVALLHGRVGVMLADFLIEHPRVTLQVESTNRR 60 M A AA E E A P G +R++ P+ + H + +LA FL HP V L++E +NRR Sbjct: 72 MTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHVFLAPLLARFLCAHPDVRLELELSNRR 131 Query: 61 VDVINEGVDIALRVLLPPLQDSDLVLKIFGVRHWCLAASPALLEKCRVPEVPADLH-RFP 119 VDVI EG D+A+RV L+DS LV++ FG LAASPA + + L + Sbjct: 132 VDVIGEGFDVAMRVR-STLEDSSLVVRTFGTSQQVLAASPAYVRAHGPFDTVQSLQGQRG 190 Query: 120 SMSLAIPVEQHVWHLENADGETASIRHTPRLMTDDATALKRAAVAGAGIVYLPTMVVIDE 179 +P + W L+ DGE A I + P ++TDD + + A+ G G+ LP V Sbjct: 191 LGPGGLPGQAQRWRLQGPDGEVAEIDYAPAMVTDDMQLVMQTAIGGVGLALLPFNVAHGA 250 Query: 180 LRSGALVKVLPEWAPKSGIIHAVYSSRRFLLPSVRQLIDFLARRFDATF 228 + G LV VLP++ +HAV+ SRR L+P+VR I+FLA T Sbjct: 251 IARGELVVVLPQYRGAPHQLHAVFPSRRGLVPAVRAFIEFLAVELSQTM 299 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 120 bits (301), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 2/224 (0%) Query: 1 MLVEAEAAQEAVERNRAEPQGTVRLTCPVALLHGRVGVMLADFLIEHPRVTLQVESTNRR 60 +L E + A+ V P GT+ + C ++G ML+ + +P V L + + R Sbjct: 72 ILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPEVALDISLSERS 131 Query: 61 VDVINEGVDIALRVLLPPLQDSDLVLKIFGVRHWCLAASPALLEKCRVPEVPADLHRFPS 120 +D++ EG+DI + D+ ++++ GV L SPA + + PE P DL R Sbjct: 132 IDLVEEGIDIGFFSSMQKF-DASMIVRQLGVARVILCTSPAYIARQGAPEQPEDLSRHNC 190 Query: 121 MSLAIPVEQHVWHLENADGETASIRHTPRLMTDDATALKRAAVAGAGIVYLPTMVVIDEL 180 ++ + +H WH+ N +G + +++++ L+ A+AG GIV P+ + D+L Sbjct: 191 LNFSHEYLRHHWHV-NTNGGVLDVPIVSKVVSNSGVLLRDLALAGMGIVLRPSYSLGDDL 249 Query: 181 RSGALVKVLPEWAPKSGIIHAVYSSRRFLLPSVRQLIDFLARRF 224 RSG LV+VLP + I+ VY SRR L VR +F++ RF Sbjct: 250 RSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARF 293 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 120 bits (300), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 3/224 (1%) Query: 2 LVEAEAAQEAVERNRAEPQGTVRLTCPVALLHGRVGVMLADFLIEHPRVTLQVESTNRRV 61 L + E A ++ ++ EP G++R+ PV + +F+ +P+V L+ + R Sbjct: 73 LEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPKVQLEFVLNDGRA 132 Query: 62 DVINEGVDIALRVLLPPLQDSDLVLKIFGVRHWCLAASPALLEKCRVPEVPADLHRFPSM 121 D+I EG+D+A R + P DS LV + H L ASP LE+ P+ DL + Sbjct: 133 DLIAEGIDLAFRGGVLP--DSSLVARKLVQSHLALIASPRYLERQGTPQSLTDLTAHACL 190 Query: 122 SLAIPVEQHVWHLENADGETASIRHTPRLMTDDATALKRAAVAGAGIVYLPTMVVIDELR 181 + + + VW LE G S++ TPRL + A RAA AG GI LPTM+ ++LR Sbjct: 191 ATSQAPQHTVWKLEGPHGPE-SVKVTPRLCVNTAQGQLRAARAGLGIALLPTMLASEDLR 249 Query: 182 SGALVKVLPEWAPKSGIIHAVYSSRRFLLPSVRQLIDFLARRFD 225 +G LV +LP++ + +AVY RR L +V LI+F A + + Sbjct: 250 NGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLE 293 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 107 bits (268), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 5/220 (2%) Query: 6 EAAQEAVERNRAEPQGTVRLTCPVALLHGRVGVMLADFLIEHPRVTLQVESTNRRVDVIN 65 E A + + A+P G +R+ P+ + + FL HP ++L + ++R VD+I+ Sbjct: 77 EEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDITLSDRIVDIID 136 Query: 66 EGVDIALRVLLPPLQDSDLVLKIFGVRHWCLAASPALLEKCRVPEVPADLHRFPSMSLAI 125 EG D+A+R+ L DS LV + + ASPA L+ P P +L + ++S + Sbjct: 137 EGYDMAIRI--ARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHELAQHQTISYSY 194 Query: 126 PVEQHVWHLENADGETASIRHTPRLMTDDATALKRAAVAGAGIVYLPTMVVIDELRSGAL 185 + W +G S+R + RL ++ + +AA+ G GI PT ++ LRSG L Sbjct: 195 NQSKDEWQFNGPEGPV-SVRVSSRLHVNNGDSCVQAALGGIGITRQPTFMIDQYLRSGQL 253 Query: 186 VKVLPEW-APKSGIIHAVYSSRRFLLPSVRQLIDFLARRF 224 V +L ++ AP+ G I+AVY SR L +R ++DFL F Sbjct: 254 VSILGDYGAPELG-IYAVYPSRAHLPAKMRAMLDFLTEAF 292 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 3/220 (1%) Query: 1 MLVEAEAAQEAVERNRAEPQGTVRLTCPVALLHGRVGVMLADFLIEHPRVTLQVESTNRR 60 +L + E A+ AV A G + ++ P V +L FL EH VTL + +R Sbjct: 72 ILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDVTLTLNLNDRI 131 Query: 61 VDVINEGVDIALRVLLPPLQDSDLVLKIFGVRHWCLAASPALLEKCRVPEVPADLHRFPS 120 DVI EG+D+A+R+ L DS+LV H + A+PA L + P+ P +L R Sbjct: 132 ADVIGEGIDVAIRI--ATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSPDELMRHNC 189 Query: 121 MSLAIPVEQHVWHLENADGETASIRHTPRLMTDDATALKRAAVAGAGIVYLPTMVVIDEL 180 ++++ Q W L + G+ + + ++ +D L A+AG G+ + V + Sbjct: 190 LAMSSEGSQRGWTLRQS-GKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRSMWEVGAAI 248 Query: 181 RSGALVKVLPEWAPKSGIIHAVYSSRRFLLPSVRQLIDFL 220 +G LV VL ++A + I+AV++ RR L +R +DFL Sbjct: 249 EAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFL 288 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 679,047 Number of extensions: 28650 Number of successful extensions: 205 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 27 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)