BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0015.p (861 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase [Herbasp... 105 2e-23 gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase [Herbasp... 93 8e-20 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 85 2e-17 gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 84 6e-17 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 82 2e-16 >gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 411 Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 93/201 (46%), Gaps = 5/201 (2%) Query: 4 GFTELLLERKDDEDTRHWLGVIGKGETFGAAVSERTGTTGNSVTVTPDPDKRPD--HFLL 61 G L+ E R + + G G A ER G V D+ +LL Sbjct: 105 GNLNLIARLASQEQQRLFFAEVLDGARLGNAGPERNGKNVLDVRTRATLDRAAGDGSYLL 164 Query: 62 NGEKYYSTGTLYADWILVRAHDDESD-LNVLIRSDTPGVTRVDDWDGFGQRLTGSGTTRF 120 NG ++YSTG LYA WI RA DD+ L V R D PGV +DDW FGQR T SGT F Sbjct: 165 NGTRFYSTGALYAHWIPSRAIDDDGQPLVVYTRRDAPGVRVIDDWSSFGQRTTASGTVVF 224 Query: 121 DKVLVTQQQILDRYHVSQPRRNTIITAFYQTVHLATLAGIARAVQRDAVAFTQARTRTFG 180 D V V Q+L Q N I Q + A AGIA A +D +AF R+R + Sbjct: 225 DNVRVPATQVLALKDALQQPNN--IGPVSQLIQAAIDAGIAHAAVQDTIAFVTTRSRPYV 282 Query: 181 IPGQSSPRENPLVHRVVGRLA 201 G ++P + R +G L+ Sbjct: 283 DSGLERASDDPYILRDIGNLS 303 >gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 421 Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 3/206 (1%) Query: 7 ELLLERKDDEDTRHWLGVIGKGETFGAAVSERTGTTGNSVTVTPDPDKRPDHFLLNGEKY 66 EL+ + R + + +G+ FG A++E T + + + ++G K+ Sbjct: 120 ELIRVNGSESQKRFFFERVLQGDRFGNALAELGTKTSHDRKTRLSRNAHGPGYRIDGRKF 179 Query: 67 YSTGTLYADWILVRAHDDESDLNV-LIRSDTPGVTRVDDWDGFGQRLTGSGTTRFDKVLV 125 Y+TG LYADW+ DD+ + ++ PG+T +DDW GFGQR TGSG+ F+ V V Sbjct: 180 YATGALYADWVPTSVIDDDGVQQLAIVPRHAPGLTIIDDWSGFGQRTTGSGSAVFENVHV 239 Query: 126 TQQQILDRYHVSQPRRNTIITAFYQTVHLATLAGIARAVQRDAVAFTQARTRTFGIPGQS 185 ++ + R T I Q H A GIARA D + F + R+R + G Sbjct: 240 PADAVIG--FATAFSRPTQIGPMAQIQHAAIDLGIARAAYADLLTFVRTRSRAWVDSGVE 297 Query: 186 SPRENPLVHRVVGRLASLAWSAEQLV 211 ++PL R VG L +AE L+ Sbjct: 298 RAVDDPLTIREVGDLTIQLHAAEALL 323 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 9/145 (6%) Query: 234 LRVGFVPGPYIDEFKIGVQP-ELEKKGYKIRYYEFSTGLEANSAVFKGDIDANVMQHSVF 292 +RVG GP+ F+ + E + GYK++ EF+ ++ N+A+ G++DAN QH F Sbjct: 35 IRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIEFNDYIQPNAALDAGELDANSYQHRPF 94 Query: 293 LKSYNDRNKTDLVGIVQVPTPPMGLYSKKHRSLDGLRKGFTVAVPNDPVNLQRALWILQR 352 L + L + PM +YS+K+R L+ + G + +PNDP N R L +LQ+ Sbjct: 95 LNAQIKTRGYKLYAEGKTMIGPMAIYSRKYRKLEDVPVGARIGIPNDPANESRVLLLLQK 154 Query: 353 LGWIRIK--------ENANPVDVTE 369 G+I+++ NA P+D+TE Sbjct: 155 HGFIKLRAGIDPLTGTNATPIDITE 179 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 83.6 bits (205), Expect = 6e-17, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 85/143 (59%), Gaps = 2/143 (1%) Query: 233 ELRVGFVPGPYIDEFKIGVQPELEKKGYKIRYYEFSTGLEANSAVFKGDIDANVMQHSVF 292 ++++G GP+ E V+ LEK G +++ EF+ ++ N+A+ GD+DAN QH + Sbjct: 29 QIKMGVTAGPHA-EIMEQVKKLLEKDGVQMKVIEFTDYIQPNAALAAGDLDANSYQHQPY 87 Query: 293 LKSYNDRNKTDLVGIVQVPTPPMGLYSKKHRSLDGLRKGFTVAVPNDPVNLQRALWILQR 352 L + V + T PMG+YSKK +SL+ L++G V VPNDP N RAL +LQ Sbjct: 88 LDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSLNDLKQGARVGVPNDPTNGGRALLVLQA 147 Query: 353 LGWIRIKENANPVDVTELDVVEN 375 G I++K +A + T LD+VEN Sbjct: 148 KGVIKLKADAG-LKATPLDIVEN 169 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 2/143 (1%) Query: 233 ELRVGFVPGPYIDEFKIGVQPELEKKGYKIRYYEFSTGLEANSAVFKGDIDANVMQHSVF 292 +LR+G VPG Y D + + E +++G ++ EF+ N A+ GD+D N QH F Sbjct: 24 KLRIGVVPGAYGDSVAVAAK-EAKRQGIDVQVVEFTDWTTPNVALDAGDLDLNYFQHQPF 82 Query: 293 LKSYNDRNKTDLVGIVQVPTPPMGLYSKKHRSLDGLRKGFTVAVPNDPVNLQRALWILQR 352 L + +N L +GLYS K++SL L +G V + NDPVN RAL +LQ Sbjct: 83 LDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQGAKVGIANDPVNQGRALLLLQN 142 Query: 353 LGWIRIKENANPVDVTELDVVEN 375 +G I++K + + D+++N Sbjct: 143 VGLIKLKPKVGYLGSID-DIIDN 164 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,803,568 Number of extensions: 127827 Number of successful extensions: 343 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 331 Number of HSP's successfully gapped: 8 Length of query: 861 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 768 Effective length of database: 1,179,515 Effective search space: 905867520 Effective search space used: 905867520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)