BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0013.p
         (100 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313871|ref|YP_003777963.1| thiophene oxidase [Herbaspirill...    90   3e-20
gi|300314031|ref|YP_003778123.1| coenzyme F420-dependent N5,N10-...    72   9e-15

>gi|300313871|ref|YP_003777963.1| thiophene oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 433

 Score = 90.1 bits (222), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 1   VVKALWDSWEDGAMIGDKAGGRFIDTAKVQPIAHRGTHFSVHGPLNLPRTPQGHPVLVQA 60
           V   LW SW+  A+   +   R+ D  KV  I H+G HFSV GPLN+P +PQGHPV++QA
Sbjct: 164 VTHKLWHSWQPDALRLQQ--DRYADADKVAAIDHQGAHFSVRGPLNIPASPQGHPVIIQA 221

Query: 61  GGSADGRDLAARHAEAVFTASQSFEESLAYGRELKARA 98
           G S  G+D AAR AE VF          A+ R+LK RA
Sbjct: 222 GSSDRGQDFAARWAEVVFNIQPDLPRLQAFYRDLKNRA 259


>gi|300314031|ref|YP_003778123.1| coenzyme F420-dependent
           N5,N10-methylene tetrahydromethanopterin reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score = 72.0 bits (175), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 1   VVKALWD-SWEDGAMIGDKAGGRFIDTAKVQPIAHRGTHFSVHGPLNLPRTPQGHPVLVQ 59
           VV  LW+ SWEDGA++ D+A   + D AKV  IAH G ++ V G      + Q  PVL Q
Sbjct: 168 VVYKLWEGSWEDGAVLRDRARRVYADPAKVHKIAHHGDYYHVEGIHLSEPSRQRTPVLYQ 227

Query: 60  AGGSADGRDLAARHAEAVFTASQS 83
           AG S  G+   ARHAE VF +SQS
Sbjct: 228 AGSSGRGQAFGARHAECVFISSQS 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 372,633
Number of extensions: 14972
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 100
Length of database: 1,619,870
Length adjustment: 69
Effective length of query: 31
Effective length of database: 1,293,155
Effective search space: 40087805
Effective search space used: 40087805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)