BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0011.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310385|ref|YP_003774477.1| metal-dependent hydrolase [Herb...   122   8e-30
gi|300313781|ref|YP_003777873.1| metal-dependent hydrolase [Herb...   110   3e-26

>gi|300310385|ref|YP_003774477.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  122 bits (307), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/80 (72%), Positives = 65/80 (81%)

Query: 49  ADWKNGLQPADYQHIRICLDTALEAFGPQRLMFGSDWPVCLLAASYDKVADVVADWAAAN 108
           ADW+ GL+  D+ +I +CLDTALEAFGPQRLMFGSDWPVCLLAASY KVA VV +WAA  
Sbjct: 209 ADWQRGLRQKDFDNISLCLDTALEAFGPQRLMFGSDWPVCLLAASYAKVAGVVREWAATR 268

Query: 109 LGKDEQDALWGGTAARCYGL 128
           L   EQ+ LWG TAARCYGL
Sbjct: 269 LSAAEQELLWGATAARCYGL 288


>gi|300313781|ref|YP_003777873.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  110 bits (276), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 61/80 (76%)

Query: 49  ADWKNGLQPADYQHIRICLDTALEAFGPQRLMFGSDWPVCLLAASYDKVADVVADWAAAN 108
           ADW  GL   D++HI  CLDTAL+ FGPQRLMFGSDWPVCLLAASY +V  VV +W+A  
Sbjct: 218 ADWLRGLCTRDFEHIVQCLDTALDLFGPQRLMFGSDWPVCLLAASYSRVVTVVREWSATR 277

Query: 109 LGKDEQDALWGGTAARCYGL 128
           L   +QDALWG ++AR YGL
Sbjct: 278 LCPSDQDALWGESSARIYGL 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 387,530
Number of extensions: 12790
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)