BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0007.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 271 3e-74 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 141 4e-35 gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [H... 128 3e-31 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 127 7e-31 gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [H... 121 4e-29 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 271 bits (693), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 131/153 (85%), Positives = 142/153 (92%) Query: 1 MNHLSAAQNIFIGREPRGRFGMFLDEETLNRQAAGIFARMRLKLDPRTPVGELTVARQQM 60 MNHLSAAQNIFIGREPR G+F+DE+ LNRQAA IFARMRL +DP TPVGELTVARQQM Sbjct: 109 MNHLSAAQNIFIGREPRKAMGLFIDEDELNRQAAAIFARMRLDMDPSTPVGELTVARQQM 168 Query: 61 VEIAKALSFNSRVLIMDEPTAALNNAEIDELFRIIRDLQAQGVGIVYISHKMDELRRISN 120 VEIAKALSF+SRVLIMDEPTAALNNAEI ELFRIIRDLQAQGVGIVYISHKMDELR+I++ Sbjct: 169 VEIAKALSFDSRVLIMDEPTAALNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIAD 228 Query: 121 RVTVMRDGKYIATVPTEETPIDTIISMMVGRQL 153 RV+VMRDGKYIATVP +ET +DTIISMMVGR L Sbjct: 229 RVSVMRDGKYIATVPMQETSMDTIISMMVGRAL 261 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 67/76 (88%), Positives = 73/76 (96%) Query: 156 GIDIGAKSEIYKLLNTLAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGELSAAEASQ 215 GID+GAKSEIYKLL+ LAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGEL+ A+A+Q Sbjct: 445 GIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGELARADATQ 504 Query: 216 EKIMQLATQRASAVAA 231 EKIMQLATQR SAVA+ Sbjct: 505 EKIMQLATQRESAVAS 520 Score = 58.9 bits (141), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 11/142 (7%) Query: 18 GRFGM--FLDEETLNRQAAGIFARMRLKLDPRTPVGE-----LTVARQQMVEIAKALSFN 70 GRF F+D+ + R+AA ++ R +L +TP E L+ QQ + IAK L + Sbjct: 378 GRFTRVGFMDQRAI-REAAQMYVR---QLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRD 433 Query: 71 SRVLIMDEPTAALNNAEIDELFRIIRDLQAQGVGIVYISHKMDELRRISNRVTVMRDGKY 130 +L DEPT ++ E+++++ L QG IV IS ++ E+ R+S+RV VM +G+ Sbjct: 434 CDILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRI 493 Query: 131 IATVPTEETPIDTIISMMVGRQ 152 + + + I+ + R+ Sbjct: 494 TGELARADATQEKIMQLATQRE 515 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 141 bits (356), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 67/151 (44%), Positives = 105/151 (69%), Gaps = 1/151 (0%) Query: 3 HLSAAQNIFIGREPRGRFGMFLDEETLNRQAAGIFARMRLKLDPRTPVGELTVARQQMVE 62 +L A N+F+ RE R R+G +L + R+A I ++ + + PV +L+VA+QQ VE Sbjct: 94 YLDAVDNMFLARELRSRWG-WLQRAAMRRRAQEIIGQLGVAIPLDVPVCKLSVAQQQFVE 152 Query: 63 IAKALSFNSRVLIMDEPTAALNNAEIDELFRIIRDLQAQGVGIVYISHKMDELRRISNRV 122 IAKAL+ ++R+L++DEPTA L AE++ LF ++R L+AQGV I++ISH ++E+ I +R+ Sbjct: 153 IAKALALDARILVLDEPTATLTPAEVEHLFAVMRSLRAQGVAIIFISHHLEEIFEICDRI 212 Query: 123 TVMRDGKYIATVPTEETPIDTIISMMVGRQL 153 TV+RDG Y+AT T E ++ MMVGR++ Sbjct: 213 TVLRDGAYVATCATAEVDQARLVEMMVGRRI 243 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 44/68 (64%) Query: 156 GIDIGAKSEIYKLLNTLAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGELSAAEASQ 215 GID+GAKSEIY+L+ QG +I+MISSELPEV+ M+ RV V G I L + Sbjct: 431 GIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMADRVCVFRGGGIVATLEGEAVNA 490 Query: 216 EKIMQLAT 223 E+IM AT Sbjct: 491 EEIMTHAT 498 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 69/127 (54%), Gaps = 1/127 (0%) Query: 21 GMFLDEETLNRQAAGIFARMRLKL-DPRTPVGELTVARQQMVEIAKALSFNSRVLIMDEP 79 G+FLD + R+R+K + V L+ QQ V IA+ ++ +VLI DEP Sbjct: 369 GLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGGNQQKVVIARWINHAMKVLIFDEP 428 Query: 80 TAALNNAEIDELFRIIRDLQAQGVGIVYISHKMDELRRISNRVTVMRDGKYIATVPTEET 139 T ++ E+++++R+ AQG I+ IS ++ E+ +++RV V R G +AT+ E Sbjct: 429 TRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMADRVCVFRGGGIVATLEGEAV 488 Query: 140 PIDTIIS 146 + I++ Sbjct: 489 NAEEIMT 495 >gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 546 Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 64/150 (42%), Positives = 103/150 (68%) Query: 4 LSAAQNIFIGREPRGRFGMFLDEETLNRQAAGIFARMRLKLDPRTPVGELTVARQQMVEI 63 LS A+NI+IGR+P +D + +A +FAR+ + L R V +L+VA++ VEI Sbjct: 125 LSVAENIWIGRQPLCGTPRRIDWRRMEDEARALFARLEVDLPVRARVKDLSVAQRHFVEI 184 Query: 64 AKALSFNSRVLIMDEPTAALNNAEIDELFRIIRDLQAQGVGIVYISHKMDELRRISNRVT 123 A+ALS ++V+IMDEPTAAL++ EI EL+RII L+ G +++ISHK DE+ +++R T Sbjct: 185 ARALSQQAQVVIMDEPTAALSHHEIGELYRIIGQLRRAGTAVIFISHKFDEIYAVADRYT 244 Query: 124 VMRDGKYIATVPTEETPIDTIISMMVGRQL 153 V+RDG++IA+ + ++++MVGR++ Sbjct: 245 VLRDGRFIASGELADITEQQLVALMVGREV 274 Score = 59.7 bits (143), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 39/49 (79%) Query: 156 GIDIGAKSEIYKLLNTLAEQGKAIVMISSELPEVLRMSHRVLVMCEGRI 204 GIDIG+K+ +++ + L QG A++++SSELPEV+ MS R++VM +GR+ Sbjct: 460 GIDIGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVMHQGRV 508 Score = 58.5 bits (140), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 49/80 (61%) Query: 50 VGELTVARQQMVEIAKALSFNSRVLIMDEPTAALNNAEIDELFRIIRDLQAQGVGIVYIS 109 V +L+ QQ V +AK L+ RVLI+DEPT ++ + R I +L AQG+ ++ +S Sbjct: 428 VAQLSGGNQQKVVLAKWLATQPRVLILDEPTKGIDIGSKAAVHRFIGELVAQGLAVILVS 487 Query: 110 HKMDELRRISNRVTVMRDGK 129 ++ E+ +S+R+ VM G+ Sbjct: 488 SELPEVMGMSDRIVVMHQGR 507 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 127 bits (319), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 66/154 (42%), Positives = 105/154 (68%), Gaps = 8/154 (5%) Query: 4 LSAAQNIFIGRE---PRGRFGMFLDEETLNRQAAGIFARMRL-KLDPRTPVGELTVARQQ 59 LS A+NIF+G E P GR ++ + R+A + + + ++ PV + QQ Sbjct: 97 LSVAENIFMGHEITLPGGR----MNYPAMYRRAEELMRELNMPDINVALPVSQYGGGHQQ 152 Query: 60 MVEIAKALSFNSRVLIMDEPTAALNNAEIDELFRIIRDLQAQGVGIVYISHKMDELRRIS 119 +VEIAKAL+ ++R+LI+DEP+++L +EI L +II+DL+A+GV VYISHK+DE+ + Sbjct: 153 LVEIAKALNKDARLLILDEPSSSLTASEIGVLLKIIKDLKARGVACVYISHKLDEVAEVC 212 Query: 120 NRVTVMRDGKYIATVPTEETPIDTIISMMVGRQL 153 + ++V+RDGK+IAT P +E +D II+ MVGR++ Sbjct: 213 DTISVIRDGKHIATTPMQEMDVDKIITQMVGREI 246 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/77 (48%), Positives = 53/77 (68%) Query: 156 GIDIGAKSEIYKLLNTLAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGELSAAEASQ 215 G+D+GAK+EIY+L++ LA+ G AI+M+SSEL EVL +S RVLV+ EGR+ G+ SQ Sbjct: 437 GVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQ 496 Query: 216 EKIMQLATQRASAVAAP 232 E ++ A + A P Sbjct: 497 ETVLAAAINQPVPQATP 513 Score = 60.8 bits (146), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 37 FARMRLKL-DPRTPVGELTVARQQMVEIAKALSFNSRVLIMDEPTAALNNAEIDELFRII 95 RMR+K P P+ L+ QQ +AK L +VLI+DEPT ++ E++R+I Sbjct: 391 IGRMRVKTATPFLPITSLSGGNQQKAVLAKMLLAQPKVLILDEPTRGVDVGAKAEIYRLI 450 Query: 96 RDLQAQGVGIVYISHKMDELRRISNRVTVMRDGKYIATVPTEETPIDTIISMMVGRQLP 154 +L G+ I+ +S ++ E+ +S+RV V+ +G+ + +T+++ + + +P Sbjct: 451 SELAKAGLAIIMVSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQETVLAAAINQPVP 509 >gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 121 bits (304), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 65/148 (43%), Positives = 97/148 (65%), Gaps = 3/148 (2%) Query: 4 LSAAQNIFIGREPRGRFGMFLDEETLNRQAAGIFARMRL-KLDPRTPVGELTVARQQMVE 62 LS A+N+F+ + PR RFG ++D + L A + L +LDP TPVG+L + QQMVE Sbjct: 102 LSIAENLFLEKLPR-RFG-WIDRKKLAEAARAQMEVVGLGELDPWTPVGDLGLGHQQMVE 159 Query: 63 IAKALSFNSRVLIMDEPTAALNNAEIDELFRIIRDLQAQGVGIVYISHKMDELRRISNRV 122 IA+ L + R LI+DEPTA L N E++ LF I L+A+GV I+YISH+++EL+RI++R+ Sbjct: 160 IARNLIGSCRCLILDEPTAMLTNREVELLFSRIERLRAEGVAIIYISHRLEELKRIADRI 219 Query: 123 TVMRDGKYIATVPTEETPIDTIISMMVG 150 V+RDGK + + ++ +M G Sbjct: 220 VVLRDGKLVCNDDIGRYSTEQLVQLMAG 247 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 47/67 (70%) Query: 156 GIDIGAKSEIYKLLNTLAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGELSAAEASQ 215 GIDIGAKS+IY+L LA QGK ++++SS+L E++++ R+ VM GRI S + SQ Sbjct: 435 GIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSAGRIADTFSRDDWSQ 494 Query: 216 EKIMQLA 222 E+I+ A Sbjct: 495 ERILAAA 501 Score = 61.2 bits (147), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 4/106 (3%) Query: 51 GELTVARQQMVEIAKALSFNSRVLIMDEPTAALNNAEIDELFRIIRDLQAQGVGIVYISH 110 GEL+ QQ V IA+ L + +++ DEPT ++ +++R+ +L AQG G++ +S Sbjct: 404 GELSGGNQQKVVIARWLYRDCPIMLFDEPTRGIDIGAKSDIYRLFAELAAQGKGLLVVSS 463 Query: 111 KMDELRRISNRVTVMRDGKYIATVPTEETPIDTII----SMMVGRQ 152 + EL +I +R+ VM G+ T ++ + I+ S VGRQ Sbjct: 464 DLRELMQICDRIAVMSAGRIADTFSRDDWSQERILAAAFSGYVGRQ 509 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 608,867 Number of extensions: 22718 Number of successful extensions: 270 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 294 Number of HSP's successfully gapped: 62 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)