BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0003.p
         (129 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310380|ref|YP_003774472.1| short-chain alcohol dehydrogena...    90   5e-20
gi|300310381|ref|YP_003774473.1| hypothetical protein Hsero_1048...    71   3e-14

>gi|300310380|ref|YP_003774472.1| short-chain alcohol dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 90.1 bits (222), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)

Query: 1   VFGKSRANDAFREQLLKLQPQARFFLLDLMDEEKCRQAVAETVAAYGRLDGLVNNAGVND 60
           VF +S     F E+L  +QP+A  F L+L D+ +CR+AVA T+  +GRLDGLVNNAGVND
Sbjct: 36  VFARSAPESQFWERLTAVQPRAALFQLELQDDARCREAVAGTIERFGRLDGLVNNAGVND 95

Query: 61  NVGLDAGRAAFMQSLEKK 78
           +VGL+AGR  F+ SLE+ 
Sbjct: 96  SVGLEAGRDEFVASLERN 113


>gi|300310381|ref|YP_003774473.1| hypothetical protein Hsero_1048
           [Herbaspirillum seropedicae SmR1]
          Length = 120

 Score = 71.2 bits (173), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 33/38 (86%)

Query: 92  PKVQEWETLMWQFQAPTPWTPQGEKWIPMAKIFDLTEQ 129
           PKV+EWE LMW+FQAPTPWTP G+KWIPM +IFDL  Q
Sbjct: 75  PKVREWEELMWRFQAPTPWTPTGQKWIPMTRIFDLAGQ 112


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 387,653
Number of extensions: 13152
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 129
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 54
Effective length of database: 1,264,745
Effective search space: 68296230
Effective search space used: 68296230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)