BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0002.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310379|ref|YP_003774471.1| hypothetical protein Hsero_1046...   331   4e-92
gi|300310362|ref|YP_003774454.1| galactonate dehydratase [Herbas...    56   3e-09

>gi|300310379|ref|YP_003774471.1| hypothetical protein Hsero_1046
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  331 bits (848), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 156/176 (88%), Positives = 169/176 (96%)

Query: 2   RXPGKAERIRLLEQNGYPCYTTSAGWLGYDDAKLRRLCKEAIDGGFNHIKLKVGRDLADD 61
           +  GKAER+R+LEQ GYPCYTTSAGWLGY+DAKLRRLC+EAID GFNH+KLKVGRDLADD
Sbjct: 168 KEAGKAERLRVLEQEGYPCYTTSAGWLGYEDAKLRRLCQEAIDQGFNHVKLKVGRDLADD 227

Query: 62  KRRVTIARDVIGPDRHLMIDANQVWEVDQAIEWVNELAFAKPWFIEEPTSPDDVEGHRKI 121
           KRRVTIAR+V+GP+R LMIDANQVWEV QAI+WVN+LAFA+PWFIEEPTSPDDVEGHRKI
Sbjct: 228 KRRVTIAREVLGPERKLMIDANQVWEVHQAIDWVNQLAFAQPWFIEEPTSPDDVEGHRKI 287

Query: 122 REGIGAVKVATGEMCQNRVLFKQFIMRGAIDVVQIDSCRLGGVNEILAVLLMAAKY 177
           REGIGAVKVATGEMCQNRVLFKQFIMR AIDVVQIDSCRLGGVNEILAV+LMAAKY
Sbjct: 288 REGIGAVKVATGEMCQNRVLFKQFIMRDAIDVVQIDSCRLGGVNEILAVMLMAAKY 343


>gi|300310362|ref|YP_003774454.1| galactonate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 46  GFNHIKLKVGRDL----ADDKRRVTIA-----RDVIGPDRHLMIDANQVWEVDQAIEWVN 96
           GF  +K+    +L    + DK  +T+A     R+ +GP+  + +D +       A   + 
Sbjct: 139 GFTAVKMNGTEELQFIDSHDKIELTLANVQAVREAVGPNVGIGVDFHGRVHKPMAKALIK 198

Query: 97  ELAFAKPWFIEEPTSPDDVEGHRKIREGIGAVKVATGEMCQNRVLFKQFIMRGAIDVVQI 156
           EL   K  FIEEP   ++ E  ++I   + +  +A GE   +R  FK+ +  G +D++Q 
Sbjct: 199 ELEPYKLMFIEEPVLSENAEALKEIAH-LTSTPIALGERLYSRWDFKRILSEGYVDIIQP 257

Query: 157 DSCRLGGVNEILAVLLMAAKYKLPV 181
           D    GG+ E   + +MA  Y + +
Sbjct: 258 DVSHAGGITETRKIAMMAEAYDVAL 282


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 648,630
Number of extensions: 25141
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)