BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0029.p (274 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 192 2e-50 gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore rece... 92 4e-20 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 80 1e-16 gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore rece... 71 9e-14 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 64 2e-11 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 192 bits (488), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/148 (67%), Positives = 111/148 (75%), Gaps = 5/148 (3%) Query: 38 RALSGGQVD----DARALARDRPPVQLPYAINVGNPVYGQPQPTPLPNTDTAERQTSTAL 93 L G +VD D R L R P PYA+N+ NPVYGQ QPTP NTDT+ERQ ST L Sbjct: 369 EVLVGTEVDWLTLDQRML-RINPSNVAPYAVNIYNPVYGQAQPTPTANTDTSERQISTGL 427 Query: 94 FLQDQLSLAQRWRLLAGVRFDSFRSTPDNRRVGTATRQDKSATSPRLGLTYLATPSLSLY 153 +LQDQLSL++RWRLLAGVR D+FRST +N R G TRQDK A SPRLGLTYL TPS S+Y Sbjct: 428 YLQDQLSLSERWRLLAGVRADAFRSTLNNLRNGAVTRQDKHAYSPRLGLTYLLTPSWSVY 487 Query: 154 ASVGKSFRPNSGSDASGNAFSPETARAA 181 S KSFRPNSGSD SGNAFSPET+RAA Sbjct: 488 VSASKSFRPNSGSDVSGNAFSPETSRAA 515 >gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 715 Score = 92.0 bits (227), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 53/116 (45%), Positives = 74/116 (63%), Gaps = 4/116 (3%) Query: 64 INVGNPVYGQPQPTPLPNTDTA-ERQTSTALFLQDQLSLAQRWRLLAGVRFDSFRSTPDN 122 I++ NP+YG +P T ++ E Q ALF+QDQLSL+ +W+LL G+R+D + + + Sbjct: 407 IDIYNPIYGAARPALDDRTSSSDENQRVKALFVQDQLSLSPQWKLLGGLRWDQYNQSVVS 466 Query: 123 RR--VGTATRQDKSATSPRLGLTYLATPSLSLYASVGKSFRPNSGSDASGNAFSPE 176 R VGT T Q +SA SPR G++YL S+Y S GKSFR NSG D +G F P+ Sbjct: 467 RVAPVGT-TSQRQSAVSPRAGISYLPNAWSSVYLSAGKSFRGNSGVDVNGRPFDPQ 521 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/122 (40%), Positives = 63/122 (51%), Gaps = 5/122 (4%) Query: 63 AINVGNPVYGQPQP---TPLPNTDTAERQTSTALFLQDQLSLAQRWRLLAGVRFDSFRST 119 ++N+ NPVYG P T N + E T L+ QDQ+ QR L G R+D + Sbjct: 395 SLNIDNPVYGVTIPAATTLFGNLE--ENMNQTGLYAQDQIKFDQRLTLTLGGRWDKVKDE 452 Query: 120 PDNRRVGTATRQDKSATSPRLGLTYLATPSLSLYASVGKSFRPNSGSDASGNAFSPETAR 179 N T TR D SA S R+GL+YL T ++ Y S SF P +GSD +G F P AR Sbjct: 453 TRNYFNRTTTRSDDSALSGRIGLSYLVTRDIAPYVSYATSFLPQTGSDFNGKPFDPTKAR 512 Query: 180 AA 181 A Sbjct: 513 QA 514 >gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 71.2 bits (173), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 63 AINVGNPVYGQPQPTPLPNT-DTAERQTSTALFLQDQLSLAQRWRLLAGVRFDSFRSTPD 121 ++++ NPVY QP P D + T L+ QDQ+ QR L G R+D R + Sbjct: 523 SLDIDNPVYTQPIPAATTRFGDLDQTLVQTGLYAQDQIRY-QRIVLTLGARYDRSRDSTR 581 Query: 122 NRRVGTATRQDKSATSPRLGLTYLATPSLSLYASVGKSFRPNSGSDASGNAFSPETAR 179 N + +++A S R+GL+YL +P L+ Y S G SF P +G D G F TAR Sbjct: 582 NAANNSLQAAEENAFSGRVGLSYLVSPELAPYVSYGSSFLPQAGQDVDGKPFKAATAR 639 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 6/98 (6%) Query: 80 PNTDTAERQTSTALFLQDQLSLAQRWRLLAGVRFDSFRSTPDNRRVGTATRQDKSATSPR 139 P + ++ L++QD+++LA W++LAG+R+D F NRR G + + A SPR Sbjct: 423 PFQMNYHKASNLGLYVQDKITLAAHWKMLAGLRWDRFEVDSRNRRNGVRSERTAHALSPR 482 Query: 140 LGLTYLATPSLSLYASVGKSFRPNSGS------DASGN 171 +G+ + A P Y S K+F P G DA GN Sbjct: 483 IGVVWEALPGQHAYLSWSKNFAPVGGDVIGITPDARGN 520 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.130 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 853,845 Number of extensions: 34517 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 8 Length of query: 274 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 190 Effective length of database: 1,222,130 Effective search space: 232204700 Effective search space used: 232204700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)