BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0022.p
         (703 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313039|ref|YP_003777131.1| hypothetical protein Hsero_3745...   216   7e-57
gi|300313040|ref|YP_003777132.1| hypothetical protein Hsero_3746...   122   1e-28

>gi|300313039|ref|YP_003777131.1| hypothetical protein Hsero_3745
           [Herbaspirillum seropedicae SmR1]
          Length = 826

 Score =  216 bits (549), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 127/237 (53%), Positives = 159/237 (67%), Gaps = 6/237 (2%)

Query: 249 DSSGLAVASYGEQARTFLVNGATMCGYLDFVNAMPCADDVAAADLKQAVRLYAEQAARNS 308
           D  GLAVASYGEQAR  LV  A  C + DF     CA  +A AD KQA+ LYAEQAAR S
Sbjct: 205 DPMGLAVASYGEQARLMLVGEAGSCNWSDFNEGRDCAQSIAPADFKQAIHLYAEQAARGS 264

Query: 309 NSGVQSLRIIAEWALSDPERAQKLIDDPVAQRLLVSYALARVGDMSGADATRPAEYE--- 365
            S   SL  +A W L + ER+  LIDD VAQRLLV+YALAR+GD+         +Y+   
Sbjct: 265 ASAQSSLEALAAWNLGNAERSAALIDDAVAQRLLVAYALARLGDVGEGPQAGGYDYDPTA 324

Query: 366 VSWGGYGYVDAARGGKDAKVNPVLPSLVAALQKRGIANLADADRVAALAYRSGMYDLAQT 425
            + G  GY DAAR     K +P+L +L+ AL++RG+  +  ADRVAALAYR+G Y+LA +
Sbjct: 325 PTSGSSGYADAAR-SDTLKPSPILVNLIDALKRRGLEKIDGADRVAALAYRTGRYELAAS 383

Query: 426 LADKQRSALSSWVRAKLALRKGDAAAAAQAYAEASKAFPQNDASVEP--ASLSPGEK 480
           LA +Q +AL+ WVRAKLALR+GD  AA QAY  A +AFP+NDAS+EP  A+L  GE+
Sbjct: 384 LAGRQDTALAWWVRAKLALRRGDNEAAVQAYTRAVQAFPRNDASLEPGNANLLMGEQ 440



 Score =  206 bits (525), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 105/127 (82%)

Query: 483 PEPRAAADLPGPFVTDGERKRYAASESKPNQRYHYRNIAVDYVMKSADELPARSQAFAAV 542
           P+ RA ADLPGP VTDGER+RYAASE+KP +R+HYR++A DYVMK+AD LP RSQAFAAV
Sbjct: 669 PQARAQADLPGPLVTDGERQRYAASEAKPYKRFHYRDVAADYVMKAADALPPRSQAFAAV 728

Query: 543 LCKGTGFVYYDAALAPLPYRRYVKEGAAVPFSADFGQNCAEPDFKAAGRFPYVQAWKKTR 602
           LC+G  FVYYD   A   YRRYVKEGAAVPFSADFGQNC EPDF AA RFPYVQAW+  R
Sbjct: 729 LCQGVNFVYYDQPRAEQLYRRYVKEGAAVPFSADFGQNCVEPDFAAAARFPYVQAWRGAR 788

Query: 603 HWVATHR 609
            WVA HR
Sbjct: 789 GWVARHR 795



 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 73/119 (61%), Gaps = 6/119 (5%)

Query: 2   HIKHLRIAVALAIPFSTAVVIACGPDFPPQVLDDRAGTLKATPANSFAYEAAHLVKPTDA 61
            +K L  A +  +    A V+ACGPDFP Q+LDDR G L+ TPANSFA+EAAHLV P D 
Sbjct: 11  RMKKLAYAASGLLVLGAATVVACGPDFPMQLLDDRVGALRNTPANSFAWEAAHLVTPADK 70

Query: 62  LQANEGGGASDPSGKPD------AADAAFMNPVQLAQLKAVRALKDGDAAYAQGIDLPP 114
           LQA+EG G     G+PD        +   ++  Q   L+A+RA  DG++AYA G  LPP
Sbjct: 71  LQADEGSGYEQAVGQPDDPRSLRMIEKGRLDAAQWTALQAMRAAADGESAYAAGAALPP 129


>gi|300313040|ref|YP_003777132.1| hypothetical protein Hsero_3746
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 129 AQAWLKAYAKQTSHPWRVALPSYSTRVSWDDNGRISTVESERPLLASGNVAQELTASPTV 188
           AQ WL  YA++T  PW VALP+Y  RVSWD  GRI+ VESERPLLA G +  EL   P V
Sbjct: 234 AQDWLHQYAQRTRRPWHVALPAYGARVSWDAQGRIAAVESERPLLA-GGLGNELMVDPQV 292

Query: 189 VSAFLAQLDKDPSPGLVGVVWFRLPTEDDVRNWSQPTWQAVL 230
           ++ F+AQL   P  G+ G+ WFRLPT DD R WS  TW AVL
Sbjct: 293 MARFVAQLQASPPAGMAGITWFRLPTGDDRRAWSLSTWIAVL 334


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,286,383
Number of extensions: 97812
Number of successful extensions: 362
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 4
Length of query: 703
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 611
Effective length of database: 1,184,250
Effective search space: 723576750
Effective search space used: 723576750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)