BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0021.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311578|ref|YP_003775670.1| transmembrane protein [Herbaspi...   280   9e-77

>gi|300311578|ref|YP_003775670.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score =  280 bits (716), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 146/250 (58%), Positives = 190/250 (76%), Gaps = 5/250 (2%)

Query: 1   MPVSYLRSLAGKNRTLTANRHLAFVLSGVAGAINAGGFLVVGQFTSHMSGILSMMAEDLA 60
           MP+ YLR L    RT  +NRHL   L+ +AGA+NAGGFL VGQ+TSHMSGI+S +A++L 
Sbjct: 1   MPIDYLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV 60

Query: 61  VGAIGLLLSGAASMLFFVAGAACSAVMINWARKRHLEAEYATPLIVEALLLLCFALLGGN 120
           +G   LL+ GA+++L F+AGAACS VMINWAR+R L +EYA PL++EA+LLLCF +LG N
Sbjct: 61  LGETLLLVGGASALLSFLAGAACSTVMINWARRRSLHSEYAMPLMLEAMLLLCFGILGSN 120

Query: 121 IAGIEWLFVPVTVLLLCFIMGLQNAMITKLSRAEIRTTHVTGMVTDIGIELGKALYWNS- 179
           +     LFVPVTV LLCF+MGLQNAMI+K+SR+EIRTTHVTG+VTDIGIE+GK  YW++ 
Sbjct: 121 LENHRVLFVPVTVALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGKICYWSAA 180

Query: 180 ----GRHPDMQVRADVAKLRTLSTLVALFFAGGVTGALGFRHIGFVFTLPLAALLVFVAL 235
               G H +  V A   K   L +L+ +FF GGV GALGF+ +GF+ T+PLAA L  +AL
Sbjct: 181 PRQPGEHGEDPVPAARRKFMLLGSLLLMFFLGGVAGALGFKLVGFLATMPLAAGLFLLAL 240

Query: 236 VPVLDDVRRA 245
           VP++DD+ R+
Sbjct: 241 VPMMDDLARS 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 668,854
Number of extensions: 25234
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)