BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0015.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313332|ref|YP_003777424.1| stringent starvation transcript...    84   1e-17
gi|300310022|ref|YP_003774114.1| glutathione S-transferase [Herb...    60   2e-10

>gi|300313332|ref|YP_003777424.1| stringent starvation transcription
           regulator A protein [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 83.6 bits (205), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 9/204 (4%)

Query: 5   LTLISHYLCPYVQRVAIVLQEKGLPFERIDIDLADKPGWFLRVSPLGKTPVLLVDGEAIF 64
           + L S   CP+ QR  +VL EKG+ FE  D+DL +KP     ++P G+ P+L+     ++
Sbjct: 2   MVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPEDISVMNPYGQVPILVERDLVLY 61

Query: 65  ESAVICEYLDDSVA-PPLHPVHVLTRARXTRARARHRGWMEFGSSLLNAIGGFYAAPDDV 123
           ES +I EY+D+    P L P   L RA   RAR     + +     ++ +    +   + 
Sbjct: 62  ESNIINEYIDERFPHPQLMPADPLMRA---RARLMLFNFEKELFVHVHTLENEKSKAAEK 118

Query: 124 SLQRRAEDIRDRFLQLEDVLGDGPYFAGDGFCMVDAVFGPVFRYFDVFDAIADFGFMATT 183
           S ++   +IRDR  QL  +     Y  GD F M+D    P+    D +          T 
Sbjct: 119 SQEKARNEIRDRLTQLAPLFLKNKYMLGDEFSMLDVALAPLLWRLDHY----GIELSKTA 174

Query: 184 PKVHAWREALRARPS-VRAAAPSD 206
             +  + E + +RP+ + A  PS+
Sbjct: 175 APLMKYAERIFSRPAYIEALTPSE 198


>gi|300310022|ref|YP_003774114.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 15/163 (9%)

Query: 5   LTLISHYLCPYVQRVAIVLQEKGLPFERIDIDLADKPGWFLRVSPLGKTPVLLV-DGEAI 63
           L LI     P+V++V +V+ EK + +E I  D+        + +PLGK P LL+ DG A+
Sbjct: 2   LKLIGSNASPFVRKVRVVMAEKKIDYEFILEDVWSASTTIQQSNPLGKVPCLLMDDGGAM 61

Query: 64  FESAVICEYLDDSVAPPLHPVHVLTRARXTRARARHRGWMEFGSSLLN-AIGGFYAAPDD 122
           F+S VI EYLD      L PV  L      R RA  + W      +L+ A+         
Sbjct: 62  FDSRVIVEYLDT-----LTPVGKLLPPN-GRERAEIKCWEALADGMLDAAVLVRLEKTLR 115

Query: 123 VSLQRRAEDIRDRFLQLE-------DVLGDGPYFAGDGFCMVD 158
            + Q+  E I+ ++ ++E       D LG+ P+  G+ + + D
Sbjct: 116 PTKQQSPEWIKRQWSKVEASLKAMADGLGEKPFCVGNHYSLAD 158


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.141    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 688,721
Number of extensions: 27846
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)