BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0013.p (264 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembr... 100 9e-23 gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herb... 89 3e-19 gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux ... 79 5e-16 gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herb... 73 3e-14 >gi|300312245|ref|YP_003776337.1| transmembrane efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 395 Score = 100 bits (250), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 114/222 (51%) Query: 32 LLALAMAAFITVLTEAMPAGLLPQMGADLRVSESLIGQLVTLYAIGSMITAIPLTATTQS 91 L AL ++AF TE + GLLP++ A+L VS S G LVT YA+G + A LTATT Sbjct: 5 LWALTISAFAIGTTEFVIMGLLPEVAANLGVSLSSAGLLVTGYALGVFVGAPLLTATTGR 64 Query: 92 WGRKPLLMTAIVGFVVVNTVTAISTSYPLTLAARFFAGVFAGVVWALIAGYAARMAPAHL 151 RK LL+ +V FVV N AI+ Y + R A G + + + A + P Sbjct: 65 LPRKTLLVALMVVFVVGNLACAIAPDYTTLMIGRVVASFAHGAFFGVGSVVATSLVPKEK 124 Query: 152 QGRAIAVTMAGIPVALSLGIPAATFLGASVGWRLSFGIMSAMTLILIAWTIVRVPDFPGQ 211 Q AIA+ G+ VA LG+P T+LG S GWR +F ++ + +I +A T V VP G Sbjct: 125 QASAIALMFTGLTVANVLGVPFGTWLGQSYGWRATFWAVTVIGVIALAATAVLVPRSQGG 184 Query: 212 KDDSRLSIAGVFMLPGVRSVLFVTLAFVLAHNILYTYIAPFL 253 ++ V M P V L +T+ +TYIAP L Sbjct: 185 EETDFGKEVRVLMRPQVMLGLLMTVLGFGGVFAAFTYIAPIL 226 >gi|300310405|ref|YP_003774497.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 422 Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 110/224 (49%) Query: 30 SGLLALAMAAFITVLTEAMPAGLLPQMGADLRVSESLIGQLVTLYAIGSMITAIPLTATT 89 SG+ +LA+ F V E +PA LL + +DL VS+ GQ VT AI + A + T Sbjct: 37 SGIASLALGVFSLVTAEFLPASLLTAIASDLHVSDGAAGQAVTATAIVGAVAAPSIPLLT 96 Query: 90 QSWGRKPLLMTAIVGFVVVNTVTAISTSYPLTLAARFFAGVFAGVVWALIAGYAARMAPA 149 ++ RK +++ + +V N + + + P+ L AR GV G W++ A A R+ P Sbjct: 97 RNIDRKRVVLMLSLLLLVSNILAVTAPNLPVLLVARVLLGVALGGFWSMAAALAMRLVPD 156 Query: 150 HLQGRAIAVTMAGIPVALSLGIPAATFLGASVGWRLSFGIMSAMTLILIAWTIVRVPDFP 209 HL RA+++ + G+ VA P ++G GWR +F ++L+ IA + +P P Sbjct: 157 HLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFVAAGVVSLVAIAIQWIAIPRLP 216 Query: 210 GQKDDSRLSIAGVFMLPGVRSVLFVTLAFVLAHNILYTYIAPFL 253 + S +A + VR L L V H +TYI P + Sbjct: 217 PKDHPSLKVLAELLGRKDVRVALLAVLLVVSGHFAGFTYIRPLM 260 >gi|300313915|ref|YP_003778007.1| transmembrane arabinose efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 78.6 bits (192), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 14/238 (5%) Query: 24 AGKLPLSGLLALAMAAFITVLTEA-MPAGLLPQMGADLRVSESLIGQLVTLYAIGSMITA 82 AG L +G LAL A + TE M A LLP+M AD +S ++ LV ++ + +++ Sbjct: 20 AGSLLTAGFLALGTFA---IGTEGFMIAPLLPRMAADFGMSVPMVASLVVIFTLVLALSS 76 Query: 83 IPLTATTQSWGRKPLLMTAIVGFVVVNTVTAISTSYPLTLAARFFAGVFAGVVWALIAGY 142 T + + R+ +L+ A+ F N + A S+S+ L AR V AG+ + Sbjct: 77 PISTVLSAAMNRRRVLIAAMTAFTAANLLAACSSSFTGLLVARLLMAVAAGLYTPNASAL 136 Query: 143 AARMAPAHLQGRAIAVTMAGIPVALSLGIPAATFLGASVGWRLSFGIMSAMTLILIAWTI 202 A M +GRA+A+ G+ +LG+P +G + GWR +F +SAM + +A + Sbjct: 137 AGAMVAPGQRGRALAIVSGGMTSPSALGLPLGAVVGHAFGWRATFLAVSAMGAVALAGIL 196 Query: 203 VRVPDFPGQKDDSRLSIAG------VFMLPGVRSVLFVTLAFVLAHNILYTYIAPFLA 254 + VP ++ + L +AG V P V+ +L VTL + + Y YIAP+L+ Sbjct: 197 LGVP----RQAGAHLHVAGLRERMAVIGQPQVQRLLAVTLLWSVGAYAAYPYIAPYLS 250 >gi|300312509|ref|YP_003776601.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] Length = 385 Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 4/192 (2%) Query: 32 LLALAMAAFITVLTEAMPAGLLPQMGADLRVSESLIGQLVTLYAIGSMITAIPLTATTQS 91 L ALA+AAF TE + GLLP + DL V+ G LV+ YA+G A L T Sbjct: 5 LFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAILTAK 64 Query: 92 WGRKPLLMTAIVGFVVVNTVTAISTSYPLTLAARFFAGVFAGVVWALIAGYAARMAPAHL 151 W RK L+ + F++ N + A++ +Y + AR + + + AA + Sbjct: 65 WPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELVAPQK 124 Query: 152 QGRAIAVTMAGIPVALSLGIPAATFLGASVGWRLSFGIMSAMTLI--LIAWTIV--RVPD 207 + +A+A+ G+ VA LG+P T G + GWR +FG ++A+ ++ ++ WT++ ++P Sbjct: 125 RAQAVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIGVLAAIMLWTMLPKKIPM 184 Query: 208 FPGQKDDSRLSI 219 G SI Sbjct: 185 QAGNIFQEFRSI 196 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 737,312 Number of extensions: 28680 Number of successful extensions: 255 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 259 Number of HSP's successfully gapped: 9 Length of query: 264 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 181 Effective length of database: 1,226,865 Effective search space: 222062565 Effective search space used: 222062565 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)