BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0009.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314048|ref|YP_003778140.1| lipoate synthase [Herbaspirillu...   284   7e-78
gi|300314049|ref|YP_003778141.1| lipoate-protein ligase B protei...   174   1e-44

>gi|300314048|ref|YP_003778140.1| lipoate synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 330

 Score =  284 bits (727), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 137/155 (88%), Positives = 142/155 (91%), Gaps = 8/155 (5%)

Query: 190 MTTEITPAAPTLRNAT--------DKQKGAGKTAWIPIKIMPAEKLKKPDWIRVKAGSPT 241
           MTTE+TPAA +  NAT        DKQKGAGKTAWIPIK++ AEKLKKPDWIRVKAGSPT
Sbjct: 1   MTTELTPAADSSSNATGSARANPLDKQKGAGKTAWIPIKVVAAEKLKKPDWIRVKAGSPT 60

Query: 242 TRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD 301
           TRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD
Sbjct: 61  TRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD 120

Query: 302 PLDPNEPENLARTIAQLNLSYVVITSVDRDDLRDG 336
           PLDPNEPENLA+TIAQL LSYVVITSVDRDDLRDG
Sbjct: 121 PLDPNEPENLAKTIAQLRLSYVVITSVDRDDLRDG 155


>gi|300314049|ref|YP_003778141.1| lipoate-protein ligase B protein
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  174 bits (440), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/94 (86%), Positives = 88/94 (93%)

Query: 17  PQIIRRGVEDYQASFDAMRAYTDSRTADSPDQLWIVEHPPVFTLGLGADIAHVLNPHAIP 76
           P+I+RRGVE Y+ASF AMRAYTD+RTAD+PDQLWIVEHPPV+TLGLGAD AHVLNPH IP
Sbjct: 18  PEIVRRGVEPYEASFAAMRAYTDARTADTPDQLWIVEHPPVYTLGLGADRAHVLNPHDIP 77

Query: 77  VVQTDRGGEVTYHGPGQVVIYLLMDLRRNHPGAR 110
           +VQTDRGGEVTYHGPGQVVIYLLMDLRRN  GAR
Sbjct: 78  IVQTDRGGEVTYHGPGQVVIYLLMDLRRNRSGAR 111


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,209,549
Number of extensions: 48931
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)