BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0006.p (410 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 226 3e-60 gi|300314051|ref|YP_003778143.1| transcription regulator protein... 203 2e-53 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 132 6e-32 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 122 8e-29 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 112 7e-26 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 226 bits (575), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 158/238 (66%) Query: 160 KNLKIGTRLGIGFVVILMLMVVMLGISVWRLQQINSAVVSITTDSITNERNAVEWLAVIR 219 KNLKIG RL IGF+ +LMLM VM+ + VWRL I A +T ++ ER+AV+W A I+ Sbjct: 2 KNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIK 61 Query: 220 ESGIRTMAVIKSEDPDTQQYFTAQIAAESARIAPMRKKIEEINTSPHEVAQLAEINKVRD 279 E+G+RT AV+KS+D Q YF QI A+SARI+ ++K++E T E E+ K+R Sbjct: 62 ENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLRA 121 Query: 280 AYQATRNDIFKLKKAGNLDEAKKMTAEKFMPLYASYTDVVAKFRDMQRQEISTSADAVAN 339 AY+ATR IF +K AG+ A++MT + + Y D V ++ D Q+Q I +A A+ Sbjct: 122 AYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAINR 181 Query: 340 YYSSSRNLLIILGIVELVLGGALAWLLTISITRPLTQAVGIAETVAAGDLKNRFFYAS 397 Y S R++L+ LG +E+VLG ALAWLLT SITRPL QAV IAETVAAGDL +R +S Sbjct: 182 DYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSS 239 >gi|300314051|ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 203 bits (516), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 98/159 (61%), Positives = 123/159 (77%), Gaps = 3/159 (1%) Query: 1 LTEIATAAETLQEQGGRQRLVVSSPPSFASRWLAPRLWKFIDHYPDIEVILQSSSHLNDL 60 L+EIA AAE L+ Q +QRLV+S+ PSFASRWLAPRLW+FID +P++EV+LQS++HLNDL Sbjct: 79 LSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFIDAHPELEVVLQSAAHLNDL 138 Query: 61 ARDGIDVGVRFGLGNYPGLKTELIMEDFYYPVASPHYRQGRLP--SSPQQLRDCVLLRMD 118 DGIDVG+RFG GNY GL +E + +D+YYPVA+P YR R + P L C LLR+D Sbjct: 139 RLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRSKKLARPADLAHCSLLRVD 198 Query: 119 GLQESWLPWFKLAGLDLPDPAGGLVTEDSSLTLRAAADG 157 +ESW PW AGL+LP+P GGL+ EDSSLTLR AA+G Sbjct: 199 S-RESWQPWLAEAGLELPEPTGGLLVEDSSLTLRQAAEG 236 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 132 bits (331), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 133/237 (56%) Query: 161 NLKIGTRLGIGFVVILMLMVVMLGISVWRLQQINSAVVSITTDSITNERNAVEWLAVIRE 220 N+ IG RL +GF +IL +++ GI +WRL + A + + + ER +W + Sbjct: 6 NMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVA 65 Query: 221 SGIRTMAVIKSEDPDTQQYFTAQIAAESARIAPMRKKIEEINTSPHEVAQLAEINKVRDA 280 RT+A+ KS DP YF A++AA S +K++E + ++P E A +I ++R Sbjct: 66 GIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKL 125 Query: 281 YQATRNDIFKLKKAGNLDEAKKMTAEKFMPLYASYTDVVAKFRDMQRQEISTSADAVANY 340 Y ++R++I K K AGN +EA ++ + F+P +Y D + K D QR+E+ +A + Sbjct: 126 YLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAI 185 Query: 341 YSSSRNLLIILGIVELVLGGALAWLLTISITRPLTQAVGIAETVAAGDLKNRFFYAS 397 + SR L+++L + L+LG A LT+ IT+PL +AV ++ VA GDL + S Sbjct: 186 AAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTS 242 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 122 bits (305), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 127/233 (54%) Query: 160 KNLKIGTRLGIGFVVILMLMVVMLGISVWRLQQINSAVVSITTDSITNERNAVEWLAVIR 219 K+++IG+RLG GF V+L+ +V+ + +WRL+ + + + ER +W ++ Sbjct: 3 KDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTLLL 62 Query: 220 ESGIRTMAVIKSEDPDTQQYFTAQIAAESARIAPMRKKIEEINTSPHEVAQLAEINKVRD 279 + RT V+KS DP+ + + + AA S A K +E++ S E A IN R Sbjct: 63 IAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVARK 122 Query: 280 AYQATRNDIFKLKKAGNLDEAKKMTAEKFMPLYASYTDVVAKFRDMQRQEISTSADAVAN 339 + R+ I+ KK G+ + +++ ++++ + S D + D +R I + + Sbjct: 123 QFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQQ 182 Query: 340 YYSSSRNLLIILGIVELVLGGALAWLLTISITRPLTQAVGIAETVAAGDLKNR 392 SSS++ +++L +V L+ G A A LLT SITRP+ A+ I++ VAAGDL +R Sbjct: 183 DASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSR 235 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 126/240 (52%), Gaps = 4/240 (1%) Query: 161 NLKIGTRLGIGFVVILMLMVVMLGISVWRLQQINSAVVSITTDSITNERNAVEWLAVIRE 220 N+KIG RL +GF VIL V++ +S+WRLQ I +A + + +T ER +W I Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 221 SGIRTMAVIKSEDPDTQQYFTAQIAAESARIAPMRKKIEEINTSPHEVAQLAEINKVRDA 280 S RT A+ KS DP +F AA S +K IE + S E A ++ +VR Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 281 YQATRNDIFKLKKAGNLDEAKKMTAEKFMPLYASYTDVVAKFRDMQRQEISTSADAVANY 340 Y R+ I K K G +EA ++ A F Y D++ + +QR I A + Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 341 YSSSRNLLIILGIVELVLGGALAWLLTISITRPLTQAVGIAETVAAGDLKNRFFYASDER 400 Y SRNL++ L +++VLG A L + ITRPL QAV +AE VAAGDL +R DER Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRI----DER 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,131,141 Number of extensions: 42933 Number of successful extensions: 251 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 243 Number of HSP's successfully gapped: 34 Length of query: 410 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 323 Effective length of database: 1,207,925 Effective search space: 390159775 Effective search space used: 390159775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)