BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0004.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314055|ref|YP_003778147.1| branched-chain amino acid amino...   468   e-133
gi|300310002|ref|YP_003774094.1| branched-chain amino acid amino...    80   2e-16

>gi|300314055|ref|YP_003778147.1| branched-chain amino acid
           aminotransferase/4-amino-4-deoxychorismate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score =  468 bits (1203), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 218/283 (77%), Positives = 253/283 (89%), Gaps = 1/283 (0%)

Query: 1   MNDPIVYLNGDMTPLSEARIPVLDRGFIFGDGVYEVIPMYGRKPFRGTHHIARLFRSLGT 60
           MN+ IVYLNG++TPLSEAR+PVLDRGFIFGDG+YEVIPMYGRK FRG  H+ARLFRSL  
Sbjct: 1   MNEAIVYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMYGRKAFRGKQHLARLFRSLAG 60

Query: 61  IGITNPHNEAEWLALIDRVVQANDLNDQIVYIQVTRGVAKRGHAFPKDPVTPTVFMMTSP 120
           IGI NPH+EA W+ LID+VVQAN L DQ++Y+QVTRGVAKR HAFPK+ V PTV +MT+P
Sbjct: 61  IGIPNPHDEAGWMDLIDQVVQANGLQDQMIYLQVTRGVAKRAHAFPKE-VVPTVLIMTNP 119

Query: 121 LAVPSAEVRAKGVACVTLEDKRWLNCQIKSTSLLGNVLAAQYAAEHEVTEAIQFRDGFLS 180
           +A+PSA +  KGVACVT+ED+RWLNCQIKSTSLLGNVLAAQ+AAE+EVTEAIQFRDGFLS
Sbjct: 120 MALPSAAMLEKGVACVTMEDRRWLNCQIKSTSLLGNVLAAQFAAENEVTEAIQFRDGFLS 179

Query: 181 EASSSNVWIVKDGKLSAPPKDNLILEGIRYGLIEELCKSQGIVFEARRITREEVFGADEV 240
           EAS+SNVW+VKDGK+SAPPKDNLILEGIRYGL+EELC  QGI  E+RRITREEV  ADE+
Sbjct: 180 EASASNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIALESRRITREEVLAADEL 239

Query: 241 LLSSATKEVLPVVAIDDQRVGDGKPGPVFGKLYAAYQAAKAAL 283
           ++SSA+KEVLPVV +D Q VG G+PGPVF ++YAAYQAAKA L
Sbjct: 240 MISSASKEVLPVVTLDGQPVGSGRPGPVFARVYAAYQAAKARL 282


>gi|300310002|ref|YP_003774094.1| branched-chain amino acid
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 123/280 (43%), Gaps = 12/280 (4%)

Query: 3   DPIVYLNGDMTPLSEARIPVLDRGFIFGDGVYEVIPMY----GRKPFRGTHHIARLFRSL 58
           D  ++ +G++    +A + VL     +G GV+E +  Y    G   FR   H  RL  S 
Sbjct: 8   DGKIWKDGELIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPDGTAIFRLQEHTRRLRNSA 67

Query: 59  GTIGITNPHNEAEWLALIDRVVQANDLNDQIVYIQVTRGVAKRGHAFPKDPVTPTVFMMT 118
               +  P++         +VV+ N L    +   +  G  K G +   + +   V    
Sbjct: 68  KIFQMEVPYDHDTLAQAQRQVVRENQLESCYIRPLIWIGSEKLGVSAKGNQIHVAVAAW- 126

Query: 119 SPLAVPSAEVRAKGVACVTLE-DKRWLNCQIKSTSLLG----NVLAAQYAAEHEVTEAIQ 173
           S  A    +   KG+   T    +  +N  +      G    ++LA Q A      EA+ 
Sbjct: 127 SWGAYLGEDGLNKGIRVKTSSFSRHHVNVSLVRAKACGYYINSILANQEALADGYDEALL 186

Query: 174 F-RDGFLSEASSSNVWIVKDGKLSAPPKDNLILEGIRYGLIEELCKSQGIVFEARRITRE 232
              +G++SE S  NV+IVK+GK+  P   +  L+GI    +  + +  GI    +RITR+
Sbjct: 187 LDTEGYVSEGSGENVFIVKNGKIYTPDLAS-CLDGITRDAVLTMARDLGIEVIEKRITRD 245

Query: 233 EVFGADEVLLSSATKEVLPVVAIDDQRVGDGKPGPVFGKL 272
           E++ ADE   +    E+ P+  +D + +G G  GPV  KL
Sbjct: 246 EMYCADEAFFTGTAAEITPIRELDRRVIGSGARGPVTEKL 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 882,983
Number of extensions: 35285
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)