BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0002.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314056|ref|YP_003778148.1| ABC transporter permease and AT...   304   4e-84
gi|300312125|ref|YP_003776217.1| ABC transporter permease and AT...   128   4e-31

>gi|300314056|ref|YP_003778148.1| ABC transporter permease and
           ATPase components protein [Herbaspirillum seropedicae
           SmR1]
          Length = 596

 Score =  304 bits (779), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 144/222 (64%), Positives = 181/222 (81%), Gaps = 12/222 (5%)

Query: 2   VATARIYLTQSLQIRWRTWMTEKYMGKWLEHHAYYRMEQG---RIADNPDQRIAEDLRSL 58
           +A   +YL Q+LQIRWR WM+++Y+ +WL H AYYR+EQG   R++DNPDQRIAEDL++L
Sbjct: 101 IAIYSVYLKQALQIRWRYWMSQRYLDRWLAHRAYYRIEQGQQGRLSDNPDQRIAEDLQAL 160

Query: 59  TSNTISLVLGFISSLVTLVSFVGILWAISGPISFAFMQRDWVIPGYMVWFAIAYAGVGSW 118
           TS+T+SLVLGFISS VTL SF+ ILWA+SGP++F+ + + WVIPGYMVWF IAYA VGS 
Sbjct: 161 TSSTLSLVLGFISSSVTLFSFIHILWAVSGPLTFSALGQSWVIPGYMVWFVIAYAVVGSG 220

Query: 119 IIWWIGKPLVVQSYNQERFEANYRFGLIRIREHAEAIALYRGERRERGELNLRFEDIRQN 178
           ++WWIG+PLV  S++QERFEAN+RFGLIR+REHAEA+ALYRGE +E  +L  R +DIR+N
Sbjct: 221 LVWWIGRPLVGLSFHQERFEANFRFGLIRVREHAEAVALYRGEPQEHAQLTARLDDIRRN 280

Query: 179 WWAIMRTTKSLNIATNFYGQFAII---------YFSGAMSLG 211
           WW IMR TK LN+A NFYGQFA+I         YFSGA+SLG
Sbjct: 281 WWEIMRLTKMLNVAVNFYGQFAVIFPMLVSAPRYFSGAISLG 322


>gi|300312125|ref|YP_003776217.1| ABC transporter permease and
           ATPase components protein [Herbaspirillum seropedicae
           SmR1]
          Length = 594

 Score =  128 bits (321), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 109/212 (51%), Gaps = 9/212 (4%)

Query: 13  LQIRWRTWMTEKYMGKWLEHHAYYRMEQGRIADNPDQRIAEDLRSLTSNTISLVLGFISS 72
           L++RWRTW+T   + +W    AY+R+E+ ++ DN DQRI+ED++     T+++    I  
Sbjct: 110 LKLRWRTWLTTTLIDQWTRSGAYFRIERDKLLDNADQRISEDVKLFVDYTVTITSHLIHV 169

Query: 73  LVTLVSFVGILWAISGPISFAFMQRDWVIPGYMVWFAIAYAGVGSWIIWWIGKPLVVQSY 132
            V+ V+F  +LW +SG            IP YM++    Y+G    +   +G+ L+  + 
Sbjct: 170 PVSAVTFSIVLWELSGNYLLELGHLAITIPAYMLFAVYLYSGSTLLLTHLLGRSLIPVNI 229

Query: 133 NQERFEANYRFGLIRIREHAEAIALYRGERRERGELNLRFEDIRQNWWAIMRTTKSLNIA 192
            Q++ EA++R  +++IRE AE IA Y G   E   L   F  IR N W I+R T  +   
Sbjct: 230 RQQKVEADFRALMVQIREGAEQIAFYDGASVEASRLRSTFASIRANTWRIIRVTAQVMFG 289

Query: 193 TNFYGQFAII---------YFSGAMSLGGXRR 215
               GQ + I           +G M+LGG  R
Sbjct: 290 VQVPGQISSILPVLLVLPQLMAGTMTLGGMMR 321


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 699,811
Number of extensions: 26901
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)