BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0001.p (565 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 910 0.0 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 199 6e-52 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 194 1e-50 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 186 5e-48 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 181 2e-46 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/583 (77%), Positives = 496/583 (85%), Gaps = 23/583 (3%) Query: 1 MLAWFEKLVHPYPDNVIKPPPRGFTAFIWACTKGLRRYIVAMTALTAIIGAFEALLFAMM 60 M +WFEKLV PYP++ PPPRGF FIW CTKG+R YI AMT +TAIIG FEALLFA + Sbjct: 1 MFSWFEKLVQPYPEHHPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL 60 Query: 61 GRIVDWLSHIEPSQLWTQERGSLIWLAVVLAGSPLLIALQTFFKHQTLAGAFPMMLRWKF 120 GRIVDWL+ I PSQLW+QE +L WL ++LA SPLLIALQT +KHQTLAG FPM+LRW F Sbjct: 61 GRIVDWLAKIAPSQLWSQEGHTLTWLVLILAASPLLIALQTMYKHQTLAGNFPMLLRWNF 120 Query: 121 HRLMLNQSMSFYQDEFAGRVAAKVMQTALAVRDVCMIMGDILVFVMIYFVTMAAVVGGFD 180 HRLML+QSMSFYQ+EFAGRVA KVMQTALAVRD CMI+GDILVF+ IYF T+ VVG FD Sbjct: 121 HRLMLSQSMSFYQNEFAGRVATKVMQTALAVRDFCMIVGDILVFITIYFATLIGVVGSFD 180 Query: 181 LWMLAPFFGWLVLYMAALRYFVPRLSKVARNQADARSLMTGRITDAYTNIATVKLFSHAG 240 +WMLAPFF WL + ALRYFVPRLS VARNQADARSLMTGRITDAYTNIATVKLFSHAG Sbjct: 181 IWMLAPFFIWLAAFAVALRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHAG 240 Query: 241 REAGYARSAMQDFLVTVNRQMRLVSGFEIVNHSLNMVLILSTAGVALWLWTQGQVGIGAV 300 REA YARSAM++FLVTVN+QMRLVSGFE+VNH LNMVLI+ GV+L+LWTQG+VG+GAV Sbjct: 241 READYARSAMREFLVTVNQQMRLVSGFEVVNHLLNMVLIIGATGVSLYLWTQGKVGVGAV 300 Query: 301 AAATAMALRLNGIAHWVMWEMAALFEHVGTVQDGINTLSRAHEVKDLPDAQPLDVSRGEL 360 AA+TAMALRLNGIAHWVMWEM++LFEHVGTVQDGINTL+RAH+VKD PDAQPL VS+GEL Sbjct: 301 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAQPLKVSQGEL 360 Query: 361 VFDNVSFAYGATGPDARQVIDKLNLHIRPGEKIGLVGRSGAGKSTIVNLLLRFYDVEQGR 420 F+ VSF+YG P R V+DKL+L IRPGEKIGLVGRSGAGKSTIVNLLLRFYD+E GR Sbjct: 361 RFEGVSFSYGGAAP--RPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGR 418 Query: 421 VLIDGQDIAHVTQDSLRAQVGMVTQDTSLLHRSVRDNILYGRPDAGDDDMIAAAGRPDAG 480 + IDGQDIAHVTQDSLRAQ+GMVTQDTSLLHRSVR+NI YGRPDA D +M AA R +A Sbjct: 419 ITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTHAAERAEAH 478 Query: 481 D---------------------DDILSGGQRQRIAIARVMLKDAPILLLDEATSALDSEV 519 D LSGGQRQRIAIARVMLKDAPILLLDEATSALDSEV Sbjct: 479 DFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEV 538 Query: 520 EAAIQESLYRLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVE 562 EAAIQ SLY+LMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVE Sbjct: 539 EAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVE 581 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 199 bits (506), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 142/432 (32%), Positives = 217/432 (50%), Gaps = 34/432 (7%) Query: 154 VCMIMGDILVFVMIYFVTMAAVVGGFDLWMLAPFFGWLVLYMAALRYFVPRLSKVARNQA 213 V + IL ++ + +A ++ +D+W G LV Y+ + R Sbjct: 156 VSYTLFSILPTLIEIALVLAYLITHYDVWFSVITAGALVCYILFTITVTEWRTHFRRTMN 215 Query: 214 DARSLMTGRITDAYTNIATVKLFSHAGREAGYARSAMQDF-LVTVNRQMRLVSGFEIVNH 272 + S R D+ N TVK F + EA +Q + V Q S ++N Sbjct: 216 ELDSHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQ----SSLSLLNT 271 Query: 273 SLNMVLILSTAGVALWLW------TQGQVGIGAVAAATAMALRLNGIAHWVMWEMAALFE 326 + ++ ++ V L LW G + +G + A ++L +++ + + Sbjct: 272 GQSAIIAIA---VTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQ 328 Query: 327 HVGTVQDGINTLSRAHEVKDLPDAQPLDVSRGELVFDNVSFAYGATGPDARQVIDKLNLH 386 + ++ + L EV D DA+PL L FD+V F+Y RQ++ ++ Sbjct: 329 SLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYERN----RQILFDVDFT 384 Query: 387 IRPGEKIGLVGRSGAGKSTIVNLLLRFYDVEQGRVLIDGQDIAHVTQDSLRAQVGMVTQD 446 ++ G +VG SG+GKST+ LL RFYDV+ G + IDGQD+ VTQ SLR +G+V QD Sbjct: 385 VQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQD 444 Query: 447 TSLLHRSVRDNILYGRPDAGDDDMIAAA----------GRPDA-----GDDDI-LSGGQR 490 T L + ++ NI YG+P A + ++AAA PD G+ + LSGG++ Sbjct: 445 TVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERGLKLSGGEK 504 Query: 491 QRIAIARVMLKDAPILLLDEATSALDSEVEAAIQESLYRLMEGKTVVAIAHRLSTIAAMD 550 QR+AIAR +LKD IL+ DEATSALDS E AIQ+ L + +T + IAHRLSTI Sbjct: 505 QRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQ 564 Query: 551 RLIVLDQGRIVE 562 +++VLD GRIVE Sbjct: 565 QILVLDHGRIVE 576 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 147/482 (30%), Positives = 234/482 (48%), Gaps = 81/482 (16%) Query: 129 MSFYQDEFAGRVAAKVMQTALAVRD-VCMIMG----DILVFVMIYFVTMAAVVGGFDLWM 183 + Q+ F G+ +M + D +C+ + D + V++ +T AA++ + W+ Sbjct: 270 LRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMIIMT-AAILISINPWL 328 Query: 184 LA------PFFGWLV-LYMAALRYFVPRLSKVARNQADARSLMTGRITDAYTNIATVKLF 236 PF W++ + LR+ ++ ++ S +T + D I VK F Sbjct: 329 ALVTLLPLPFIAWMIHVVRDRLRHGFEKIDRIW-------SEVTNVLADTIPGIRVVKAF 381 Query: 237 SHAGREAGYARSAMQDFLVTVNRQMRLVSGFEIVNHSLNMVLILSTAGVALWLWTQGQVG 296 + RE R A + L+ +R ++ S F L V +L +W + Q+ Sbjct: 382 AQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQIT 441 Query: 297 IGAVAAATA----MALRLNGIAHWVMWEMAA---------LFEHVGTVQDGINTLSRAHE 343 +G + A A RL+ ++ V A + +HV +V + N + Sbjct: 442 VGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPEPANPVH---- 497 Query: 344 VKDLPDAQPLDVSRGELVFDNVSFAYGATGPDARQVIDKLNLHIRPGEKIGLVGRSGAGK 403 L+ +G + N+ F YG R VI ++L I PGE IGLVG SG+GK Sbjct: 498 ---------LEKVQGAIEVRNIGFRYGN-----RAVIRNMSLSIAPGEMIGLVGHSGSGK 543 Query: 404 STIVNLLLRFYDVEQGRVLIDGQDIAHVTQDSLRAQVGMVTQDTSLLHRSVRDNILYGRP 463 ST+VNL+ RFYDV +G + IDG DI + R +G+V Q+ L ++ +NI YG+P Sbjct: 544 STMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKP 603 Query: 464 DA-----------------------GDDDMIAAAGRPDAGDDDILSGGQRQRIAIARVML 500 +A G D ++ G+ LSGG+RQRI+IAR +L Sbjct: 604 EATREEIIAAARAAHAHEFILRLPQGYDSLVGERGQ-------ALSGGERQRISIARALL 656 Query: 501 KDAPILLLDEATSALDSEVEAAIQESLYRLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRI 560 D IL+LDEATS++D+ E IQ++L L++G+T +AIAHRLST+ DRL+VLD+G++ Sbjct: 657 IDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQV 716 Query: 561 VE 562 VE Sbjct: 717 VE 718 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 186 bits (471), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 104/221 (47%), Positives = 140/221 (63%), Gaps = 19/221 (8%) Query: 358 GELVFDNVSFAYGATGPDARQVIDKLNLHIRPGEKIGLVGRSGAGKSTIVNLLLRFYDVE 417 G + FD VSF Y P+ +VI L+L IRPGE IG+VGRSG+GKST+ L+ R Y E Sbjct: 475 GAISFDLVSFRYR---PETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICE 531 Query: 418 QGRVLIDGQDIAHVTQDSLRAQVGMVTQDTSLLHRSVRDNILYGRPDAGDDDMIAAAGRP 477 GR+ +DGQDIA + SLR Q+G+V Q+ +L RS+RDNI P + +I AA Sbjct: 532 TGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLA 591 Query: 478 DAGD---------DDI-------LSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 521 A D D + LSGGQRQRIAIAR ++ + IL+ DEATSALD E E Sbjct: 592 GAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEK 651 Query: 522 AIQESLYRLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVE 562 IQ+++ ++ G+TV+ IAHRLS + DR+IV+++GR+ E Sbjct: 652 IIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAE 692 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 181 bits (458), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 140/390 (35%), Positives = 194/390 (49%), Gaps = 51/390 (13%) Query: 204 RLSKVARNQADARSLMTGRITDAYTNIATVKLFSHAGREAGYARSAMQDFLVTVNRQMRL 263 RL K+ R+ + MT I + +K+F E ++ + MR+ Sbjct: 181 RLKKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLR---SYTMRM 237 Query: 264 VSGFEIVNHSLNMVLILSTAGV---ALWLWTQGQVGIGA-VAAATAMALRLNGIAHWVMW 319 + F ++ + A V AL GQ+ +G V+ TAM + L + Sbjct: 238 TAAFSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQ---- 293 Query: 320 EMAALFEHVGTVQDGINTLSRAHEVKDLPDAQPLDVS--------RGELVFDNVSFAYGA 371 L E G +Q G ++ A EV L D ++ G+L F V FAY Sbjct: 294 ----LAEINGPLQRG---MAAAEEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAY-- 344 Query: 372 TGPDARQV-IDKLNLHIRPGEKIGLVGRSGAGKSTIVNLLLRFYDVEQGRVLIDGQDIAH 430 P Q+ + +NLH+ GE I VG SG GKST+V+L+ FY G + +DG+DI Sbjct: 345 --PGHEQLALKNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIET 402 Query: 431 VTQDSLRAQVGMVTQDTSLLHRSVRDNILYGRPDAGDDDMI------------AAAGRPD 478 ++ SLR Q+ MV Q+T L ++ NI YG DA D AG P+ Sbjct: 403 ISLPSLRQQIAMVNQNTVLFDDTLAANIAYG--DANPDPARVEAAVEAAHLTDVVAGLPE 460 Query: 479 A-----GDD-DILSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQESLYRLME 532 GD+ LSGGQRQR+AIAR + KDAPIL+LDEATSALD+E E A+Q +L RLM+ Sbjct: 461 GLQTRLGDNGSRLSGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALDRLMQ 520 Query: 533 GKTVVAIAHRLSTIAAMDRLIVLDQGRIVE 562 G+T IAHRLSTI DR++VL G+I E Sbjct: 521 GRTTFVIAHRLSTIERADRIVVLAHGQIAE 550 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,666,634 Number of extensions: 66022 Number of successful extensions: 635 Number of sequences better than 1.0e-08: 101 Number of HSP's gapped: 544 Number of HSP's successfully gapped: 107 Length of query: 565 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 475 Effective length of database: 1,193,720 Effective search space: 567017000 Effective search space used: 567017000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)