BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0025.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312639|ref|YP_003776731.1| choline dehydrogenase [Herbaspi...   148   3e-37
gi|300313761|ref|YP_003777853.1| gluconate dehydrogenase [Herbas...   138   4e-34
gi|300313846|ref|YP_003777938.1| choline dehydrogenase-like prot...    92   4e-20

>gi|300312639|ref|YP_003776731.1| choline dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score =  148 bits (374), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 104/165 (63%)

Query: 1   VIVGGGLTAGLVSRQLTDQGIDVLVLERGGDHTSGAEAKLPSQRDELRWDVRQGLVQKWN 60
           V+VG G T  ++  +LT+ G+ VL LERG    +  +   P   DEL++ VR  L Q  +
Sbjct: 11  VMVGLGWTGSIMGMELTEAGLSVLALERGDMRDTNTDTPYPKAVDELKYSVRGALFQDLS 70

Query: 61  VQTYTLRHSRNDTSLPVRWMEAFLPGEGMGGAANHWNGHTWRWSEYEPTLRTHYVNRYGA 120
            +T T+RH+ +D ++P R   +FL G+G+GGA  HWNG  +R    E  +RTH+  +YG 
Sbjct: 71  RETVTIRHTLSDVAVPYRQHGSFLLGDGVGGAGFHWNGMMYRNLPEELEMRTHHEQKYGK 130

Query: 121 KVIPVNMPLQDWGVTYKEMEPHHDLFEKLFGISGKAGNINGKKQP 165
           K IP +M +QD GVTYKE+EP +D  EK+  +SGKAGN+ G+  P
Sbjct: 131 KFIPEDMTIQDHGVTYKELEPFYDFSEKVMAVSGKAGNLKGQIVP 175


>gi|300313761|ref|YP_003777853.1| gluconate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score =  138 bits (347), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 96/162 (59%)

Query: 1   VIVGGGLTAGLVSRQLTDQGIDVLVLERGGDHTSGAEAKLPSQRDELRWDVRQGLVQKWN 60
           VIVG G T  ++++++T+ G  V+ LERG    +  +   P   +EL +  R  L Q  N
Sbjct: 12  VIVGFGWTGAIMAKEMTEAGQRVVALERGVYRDTYPDGAYPKTINELEYQQRFKLFQNLN 71

Query: 61  VQTYTLRHSRNDTSLPVRWMEAFLPGEGMGGAANHWNGHTWRWSEYEPTLRTHYVNRYGA 120
             ++T R    D+++P R +  F PGEG+GGA  HW+G  WR    E  +R+HY  RYG 
Sbjct: 72  KSSFTFRRKTGDSAIPYRQIAMFKPGEGVGGAGLHWSGCHWRILPEELRMRSHYEERYGK 131

Query: 121 KVIPVNMPLQDWGVTYKEMEPHHDLFEKLFGISGKAGNINGK 162
             IP +M LQDWGV+Y+E+EP+ D  EK+ G SG A  + GK
Sbjct: 132 NFIPKDMTLQDWGVSYEELEPYFDFAEKMMGTSGTAYRVGGK 173


>gi|300313846|ref|YP_003777938.1| choline dehydrogenase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 590

 Score = 91.7 bits (226), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 1/165 (0%)

Query: 1   VIVGGGLTAGLVSRQLTDQGIDVLVLERGGDHTSGAEAKLPSQRDELRWDVRQGLVQKWN 60
           VIVG G    L++ +L   G+ V  LERG D     +   P   D+  +  R  +     
Sbjct: 12  VIVGLGWAGSLMAIELAQAGLKVRALERGPDRPP-EDFAYPKPADQYGYATRNKVFATPR 70

Query: 61  VQTYTLRHSRNDTSLPVRWMEAFLPGEGMGGAANHWNGHTWRWSEYEPTLRTHYVNRYGA 120
               T+R++    +LP R   AF PG G+GG+  HW     R +  +  L+T+    Y  
Sbjct: 71  DAALTVRYNTAQQALPTRKWGAFAPGTGVGGSGLHWTAVLIRATPTDLKLKTYADQAYKH 130

Query: 121 KVIPVNMPLQDWGVTYKEMEPHHDLFEKLFGISGKAGNINGKKQP 165
             +   M ++D+  T+ E+EPH+D F+K+ G+SG  GN+ G+ QP
Sbjct: 131 SNLDPEMRIKDFPFTWNEIEPHYDFFDKVCGLSGTTGNLRGQIQP 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 677,752
Number of extensions: 29402
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)