BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0024.p (353 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 470 e-133 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 203 1e-53 gi|300313253|ref|YP_003777345.1| methyl-accepting chemotaxis I M... 197 1e-51 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 191 7e-50 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 190 2e-49 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/334 (68%), Positives = 278/334 (83%) Query: 1 VKINRELYQVRMPKTVAADNTLLWVGRQRTSLDQAALTTDPAWAQQMYKTEADVGKQALE 60 V IN +L Q R+PKTVAADNTL+W+GRQRTSLDQAALT DPAWA++MY +A+ K+AL+ Sbjct: 38 VSINAQLSQERLPKTVAADNTLIWIGRQRTSLDQAALTNDPAWAERMYGMDANARKEALQ 97 Query: 61 WWAKYAALPQSDQGKKLVQEVTDGLTKTEKAIDEFRDAIKGGDRQQISDKARLVGTVYTA 120 WW KY ALPQ+++G+ LV++V+DG+ KTE+ + F + IK GDRQ I+D+AR VGT+YTA Sbjct: 98 WWGKYTALPQTEEGRVLVKKVSDGIDKTEQELTRFAEVIKAGDRQAIADQARKVGTIYTA 157 Query: 121 MQKSGTLLNEYETDAARQNYEDSLTRYENFRMISIAAMVIGLLLAGYSWFSLRRAISRPI 180 MQ G L++YET+ A Q+ S+ RYE R SI A+V GLLLA YSW+SLRRAI P+ Sbjct: 158 MQLDGQALSKYETEQAAQSAGASMARYEASRNFSIVAIVAGLLLAFYSWWSLRRAIGEPM 217 Query: 181 EQALKHFDDIAEGDLTHRVNVHSHDEMGQLLKGLSRMQENLTKTVSTVRTGSDAIATATK 240 ++AL+HFD IA GDLT V+VHS +EMGQLL+GL RMQE+L++TV VR+GSDAI+TAT+ Sbjct: 218 QRALRHFDAIASGDLTEAVHVHSRNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATR 277 Query: 241 EISAGNLDLSSRTEQQAASLEETASSMEELTSTVKHNADNARQASTLAVNASQIASAGND 300 EI++GNLDLSSRTEQQAASLEETASSMEELTSTVKHNADNARQA+TLAVNAS IA+ GN Sbjct: 278 EIASGNLDLSSRTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNA 337 Query: 301 VVSRVVTTMDEIRDSSTKITEIVGIIDGIAFQTN 334 VV RVV TM+EIR SS KIT+IV IIDGIAFQTN Sbjct: 338 VVGRVVQTMEEIRASSAKITDIVSIIDGIAFQTN 371 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 203 bits (517), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/180 (56%), Positives = 139/180 (77%), Gaps = 8/180 (4%) Query: 155 IAAMVIGLLLAGYSWFSLRRAISRPIEQALKHFDDIAEGDLTHRVNVHSHDEMGQLLKGL 214 +AA+++G L+A R+I +P+ +A++ +++A GDLT R+ HS DE GQL++ L Sbjct: 204 LAAIILGYLMA--------RSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQAL 255 Query: 215 SRMQENLTKTVSTVRTGSDAIATATKEISAGNLDLSSRTEQQAASLEETASSMEELTSTV 274 +M +NL + VS VR G+++I TA+ EI++GNLDLS+RTEQQA SLEETAS+MEE+TSTV Sbjct: 256 RKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTV 315 Query: 275 KHNADNARQASTLAVNASQIASAGNDVVSRVVTTMDEIRDSSTKITEIVGIIDGIAFQTN 334 + NADNARQA+ +AV+AS+IA G +V RVV TMDEI SS KI +I+G+IDGIAFQTN Sbjct: 316 RQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTN 375 >gi|300313253|ref|YP_003777345.1| methyl-accepting chemotaxis I MCP-I serine chemoreceptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 556 Score = 197 bits (500), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 103/207 (49%), Positives = 143/207 (69%) Query: 128 LNEYETDAARQNYEDSLTRYENFRMISIAAMVIGLLLAGYSWFSLRRAISRPIEQALKHF 187 L E + + R+ YE RY ++++ AM GL++A + L RAIS+P+ QA+ Sbjct: 170 LKELQINVGRELYEHEQQRYRQLILMALLAMGAGLIVAVLEAWLLVRAISQPLTQAVGIA 229 Query: 188 DDIAEGDLTHRVNVHSHDEMGQLLKGLSRMQENLTKTVSTVRTGSDAIATATKEISAGNL 247 +A GDL+ ++ V S DE GQL++ L M + L + V+ VR G++ I A+KEI++GNL Sbjct: 230 QAVAGGDLSRQIEVRSQDETGQLMQALKDMTQRLYQIVAVVRQGTETITMASKEITSGNL 289 Query: 248 DLSSRTEQQAASLEETASSMEELTSTVKHNADNARQASTLAVNASQIASAGNDVVSRVVT 307 DLS+RTEQQA SLEETAS+M +LTSTVK NADNA QA+ LA +AS++A G +VV +VV Sbjct: 290 DLSARTEQQAGSLEETASAMAQLTSTVKQNADNASQANQLAASASEVAVRGGEVVRQVVD 349 Query: 308 TMDEIRDSSTKITEIVGIIDGIAFQTN 334 TM I SST+I +I+ +IDGIAFQTN Sbjct: 350 TMTSINQSSTRIVDIIAVIDGIAFQTN 376 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 191 bits (485), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 135/330 (40%), Positives = 188/330 (56%), Gaps = 13/330 (3%) Query: 12 MPKTVAADNTLLWVGRQRTSLDQAALTTDPAWAQQMYKTEADVGKQA---LEWWAKYAAL 68 +P A L + R R S D L T ++ + AD KQ L+ A+Y L Sbjct: 50 LPSIDALSKMSLALARSR-SFDMQQLLTADKQEEKASRERAD--KQMATLLKEVARYGKL 106 Query: 69 PQSDQGKKLVQEVTDGLTKTEKAIDEFRDAIKGGDRQQISDKARLVGT---VYTAMQKSG 125 + K+L E+ + ++A E A+ D++Q + A + T VY +Q+ Sbjct: 107 VSEPREKELYPEIERNIALYKEA-HERMSALFEQDQKQAA-HALMNSTSTPVYRKLQEQI 164 Query: 126 TLLNEYETDAARQNYEDSLTRYENFRMISIAAMVIGLLLA-GYSWFSLRRAISRPIEQAL 184 L+E + A + D+ Y M +A + ++LA SW+ + R ++RP+ A+ Sbjct: 165 GELSEVNSKGAALSDADADHIYGQANMAILALVTTCVVLAMALSWW-IARLVARPLANAV 223 Query: 185 KHFDDIAEGDLTHRVNVHSHDEMGQLLKGLSRMQENLTKTVSTVRTGSDAIATATKEISA 244 +A GDLT + DE GQLL+ L +M NL V VR G+D I TA+ EI+ Sbjct: 224 DIARQVAAGDLTADIPTAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIAT 283 Query: 245 GNLDLSSRTEQQAASLEETASSMEELTSTVKHNADNARQASTLAVNASQIASAGNDVVSR 304 GN+DLSSRTEQQA +LEETAS+MEELTSTV+ N+DNARQA+ LAVNAS++A AG VV + Sbjct: 284 GNMDLSSRTEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGK 343 Query: 305 VVTTMDEIRDSSTKITEIVGIIDGIAFQTN 334 VV TM I DSS KI +I+G+IDGIAFQTN Sbjct: 344 VVATMSAINDSSRKIVDIIGVIDGIAFQTN 373 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 190 bits (482), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 121/314 (38%), Positives = 184/314 (58%), Gaps = 19/314 (6%) Query: 31 SLDQAALTTDPAWAQQMYKTEADVGKQALEWWAKYAALPQSDQGK-KLVQEVTDGLTKTE 89 SL L TDPA KT + + + + + L + + K KL D +T+T Sbjct: 68 SLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKL-----DKVTETR 122 Query: 90 KAIDEFRDAI----KGGDRQ-----QISDKARLVGTVYTAMQKSGTLLNEYETDAARQNY 140 K+ R I GD+ +S+ L ++ + + L++ + Q+ Sbjct: 123 KSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDE----LSDTQQKLMDQSV 178 Query: 141 EDSLTRYENFRMISIAAMVIGLLLAGYSWFSLRRAISRPIEQALKHFDDIAEGDLTHRVN 200 + + YE RMI + A V+ A + +++ R+I+RP+ +A++ + +A GDLT + Sbjct: 179 DQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIA 238 Query: 201 VHSHDEMGQLLKGLSRMQENLTKTVSTVRTGSDAIATATKEISAGNLDLSSRTEQQAASL 260 HS+DE G+LL+ L+ M + L V VR G+D++ TA+ +I+ GNLDLSSRTE+QA++L Sbjct: 239 AHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASAL 298 Query: 261 EETASSMEELTSTVKHNADNARQASTLAVNASQIASAGNDVVSRVVTTMDEIRDSSTKIT 320 EETASS+EELTS+VK NAD+ R++S LA NASQ+A+ G V +VV TM I DSS KI Sbjct: 299 EETASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIV 358 Query: 321 EIVGIIDGIAFQTN 334 +I+ +IDGIAFQTN Sbjct: 359 DIISVIDGIAFQTN 372 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 959,630 Number of extensions: 36011 Number of successful extensions: 392 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 304 Number of HSP's successfully gapped: 65 Length of query: 353 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 267 Effective length of database: 1,212,660 Effective search space: 323780220 Effective search space used: 323780220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)