BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0020.p (237 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisideropho... 333 7e-93 gi|300312129|ref|YP_003776221.1| TonB-dependent ferric sideropho... 89 5e-19 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 88 5e-19 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 86 4e-18 gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor prote... 75 6e-15 >gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisiderophore receptor signal peptide protein, tonB-dependent receptor [Herbaspirillum seropedicae SmR1] Length = 715 Score = 333 bits (854), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 154/199 (77%), Positives = 175/199 (87%) Query: 39 GNTFKPETGKQWEAGVKVELDEGVTNLNMALFDLRRRNVLQTDPNNTTFKIAVGEQHSQG 98 G+ FKPETGKQWE GVKV+LDEG T++N ALFDLRRRNVL TDP++T++K+A+G Q SQG Sbjct: 517 GSIFKPETGKQWETGVKVDLDEGRTSINFALFDLRRRNVLVTDPDHTSYKMAIGGQRSQG 576 Query: 99 GEIGITSDFRNGVSLMAGYSYTSAVISDDGGQKVTTNGQWLDNVPRHNFNTSARYRFKGE 158 GEI +TSD RNG+SL A YSYT+A++ DDGGQ+ TT GQWLDNVPRHNF TSARYRF GE Sbjct: 577 GEISVTSDLRNGLSLNAAYSYTAAIVIDDGGQRSTTVGQWLDNVPRHNFTTSARYRFSGE 636 Query: 159 LTGWELNGGVHGQSRQRTNGYSLPGYVLTDVGVAYNAARWRTALNVKNIFNTQYYAGGLA 218 L+GWELNGGV GQS RTNGY+LPGYVL D+GVAYNA RWRTALNVKN+FNT+YYAGGL Sbjct: 637 LSGWELNGGVRGQSMMRTNGYTLPGYVLADIGVAYNAERWRTALNVKNVFNTEYYAGGLG 696 Query: 219 NAVALGDDRIVMLTLGYRY 237 AVALGDDR VMLTLGYRY Sbjct: 697 KAVALGDDRTVMLTLGYRY 715 >gi|300312129|ref|YP_003776221.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 796 Score = 88.6 bits (218), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 13/209 (6%) Query: 34 VSSVGGNTFKPETGKQWEAGVKVELDEGVTNLNMALFDLRRRNVLQTDPNNTTFKIAVGE 93 V++ GG P+ +Q+EAGVK L + L AL+ + N +DP + F I+ G Sbjct: 596 VTAYGGGLLAPKQSEQFEAGVKFNLMDDKLELTTALYHIDYTNQSISDPVHRGFYISTGG 655 Query: 94 QHSQGGEIGITSDFRNGVSLMAGYSYTSAVISDDGGQKVTTNGQWLDNVPRHNFNTSARY 153 SQG E+ + G++++A Y+Y + V KV N+P H + Y Sbjct: 656 AVSQGLEVELKGQIMPGLNVIAQYAYNNYVQDYAPTVKV--------NLPHHTGSIWTTY 707 Query: 154 RFKGE-LTGWELNGGV---HGQSRQRTNGYSLPGYVLTDVGVAYNAARWRTALNVKNIFN 209 F+ L G+ + GV GQ T Y +PG TD+G+ Y ++ L+VKN+FN Sbjct: 708 NFRSPALQGFGVGMGVFMSSGQDVGSTGNYHVPGQTETDLGLFYKMEKYSLNLSVKNLFN 767 Query: 210 TQYYAGGL-ANAVALGDDRIVMLTLGYRY 237 + Y+ A+ + +G +R +MLT Y + Sbjct: 768 HKLYSSSTSASFIPMGPERTLMLTGTYDF 796 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 88.2 bits (217), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 11/210 (5%) Query: 35 SSVGGNTFKPETGKQWEAGVKVELDEGVTNLNMALFDLRRRNVLQTDPNNTTFKIAVGEQ 94 S V GN F PET + EAG+K + ++ + +A+FD+ ++NVL TDP N F IA GE Sbjct: 500 SDVSGNAFSPETSRAAEAGLKFQSEDKRSGATLAVFDITKQNVLTTDPANPNFSIAAGEV 559 Query: 95 HSQGGEIGITSDFRNGVSLMAGYSYTSAVISDDGGQKVTTNGQWLDNVPRHNFNTSARYR 154 S+G E+ + + + +YT A +S D V G L N+PR + + A + Sbjct: 560 RSKGVELDANARLGHHWRVTGNLAYTDAYVSRDNTLPV---GSRLVNIPRSSASLLAVFE 616 Query: 155 -FKGELTGWELNGGVHGQSRQ---RTNGYSLPGYVLTDVGVAY--NAARWRTALNVKNIF 208 + + GG++ R+ + + LP YV T +AY + + +L+V N+F Sbjct: 617 DADAHGAPYGVGGGLNYVGRRTGDQAGSFMLPSYV-TARALAYWQFTPKMKLSLDVNNLF 675 Query: 209 NTQYYAGGLANA-VALGDDRIVMLTLGYRY 237 N +YY+ + + GD+R L L ++ Sbjct: 676 NKRYYSSSYNSLWIMPGDERNATLALNIKF 705 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 85.5 bits (210), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 90/199 (45%), Gaps = 7/199 (3%) Query: 42 FKPETGKQWEAGVKVELDEGVTNLNMALFDLRRRNVLQTDPNNTTFKIAVGEQHSQGGEI 101 PE + EAG K + EG + +++F L R N+ PN I VG+Q + G E+ Sbjct: 506 LAPEQTRNTEAGAKYDFWEGRASATVSVFRLERDNIKSALPNGVV--IPVGKQRTDGAEL 563 Query: 102 GITSDFRNGVSLMAGYSYTSAVISDDGG--QKVTTNGQWLDNVPRHNFNTSARYRFKGEL 159 ++D + G L+AGY++ +AVI++ V G+ PRH+ N L Sbjct: 564 SFSADLKQGWKLLAGYAWLNAVITESSSFDNGVPFKGKNATLTPRHSGNLWLTRELGEGL 623 Query: 160 TGWELNGGVHGQSRQRTNGYSLPGYVLTDVGVAYNAARWRTALNVKNIFNTQYYAGGL-- 217 V + N +LPGYV D AY +++ LN+ N+FNT Y G Sbjct: 624 VVGGGANAVGARFANPGNTVTLPGYVTVDAMAAYRTSKYEVQLNIGNLFNTGYIISGHGT 683 Query: 218 -ANAVALGDDRIVMLTLGY 235 N G R V LTL Y Sbjct: 684 NPNLSMPGAPRNVALTLRY 702 >gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor protein [Herbaspirillum seropedicae SmR1] Length = 817 Score = 74.7 bits (182), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 98/212 (46%), Gaps = 16/212 (7%) Query: 34 VSSVGGNTFKPETGKQWEAGVKVELDEGVTNL-NMALFDLRRRNVLQTDPNNTTFKIAVG 92 V+ + +F PETGKQ E G++ + G +L + ALFDL+R+N + D N G Sbjct: 614 VNPLTNQSFGPETGKQTEVGLRYQ-PPGTNDLYSAALFDLKRQNYISYDAN--FMPTQKG 670 Query: 93 EQHSQGGEIGITSDFRNGVSLMAGYSYTS-AVISDDGGQKVTTNGQWLDNVPRHNFNTSA 151 E +G E+ + + L A YSYT AV++ + G+ V H F+ Sbjct: 671 EIAVRGLELEAVTQPMAALRLTAAYSYTPRAVVT--ASSRPAEIGKQAAAVLLHQFSVWG 728 Query: 152 RYRFKGELTGWELNGGVHGQSRQRTNG----YSLPGYVLTDVGVAYNAARWRTALNVKNI 207 +R G L G S NG +PGY L D + Y+ ARW ALN++N+ Sbjct: 729 DHRLG---NGVRLGLGARYVSATSGNGGGTPVKVPGYTLLDGLLGYDFARWSLALNLRNL 785 Query: 208 FNTQYY--AGGLANAVALGDDRIVMLTLGYRY 237 + +Y A+ GD R V+ T YR+ Sbjct: 786 TDKRYLTNCDTTASMCYYGDQRSVLATASYRW 817 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 804,987 Number of extensions: 34143 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 13 Length of query: 237 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 155 Effective length of database: 1,231,600 Effective search space: 190898000 Effective search space used: 190898000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)