BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0018.p (182 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisideropho... 301 3e-83 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 75 2e-15 gi|300312129|ref|YP_003776221.1| TonB-dependent ferric sideropho... 69 3e-13 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 65 3e-12 gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor prote... 58 4e-10 >gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisiderophore receptor signal peptide protein, tonB-dependent receptor [Herbaspirillum seropedicae SmR1] Length = 715 Score = 301 bits (770), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 140/182 (76%), Positives = 160/182 (87%) Query: 1 VELDEGVTNLNMALFDLRRRNVLQTDPNNTTFKIAVGEQHSQGGEIGITSDFRNGVSLMA 60 V+LDEG T++N ALFDLRRRNVL TDP++T++K+A+G Q SQGGEI +TSD RNG+SL A Sbjct: 534 VDLDEGRTSINFALFDLRRRNVLVTDPDHTSYKMAIGGQRSQGGEISVTSDLRNGLSLNA 593 Query: 61 GYSYTSAVISDDGGQKVTTNGQWLDNVPRHNFNTSARYRFKGELTGWELNGGVHGQSRQR 120 YSYT+A++ DDGGQ+ TT GQWLDNVPRHNF TSARYRF GEL+GWELNGGV GQS R Sbjct: 594 AYSYTAAIVIDDGGQRSTTVGQWLDNVPRHNFTTSARYRFSGELSGWELNGGVRGQSMMR 653 Query: 121 TNGYSLPGYVLTDVGVAYNAARWRTALNVKNIFNTQYYAGGLANAVALGDDRIVMLTLGY 180 TNGY+LPGYVL D+GVAYNA RWRTALNVKN+FNT+YYAGGL AVALGDDR VMLTLGY Sbjct: 654 TNGYTLPGYVLADIGVAYNAERWRTALNVKNVFNTEYYAGGLGKAVALGDDRTVMLTLGY 713 Query: 181 RY 182 RY Sbjct: 714 RY 715 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 7/181 (3%) Query: 5 EGVTNLNMALFDLRRRNVLQTDPNNTTFKIAVGEQHSQGGEIGITSDFRNGVSLMAGYSY 64 EG + +++F L R N+ PN I VG+Q + G E+ ++D + G L+AGY++ Sbjct: 524 EGRASATVSVFRLERDNIKSALPNGVV--IPVGKQRTDGAELSFSADLKQGWKLLAGYAW 581 Query: 65 TSAVISDDGG--QKVTTNGQWLDNVPRHNFNTSARYRFKGELTGWELNGGVHGQSRQRTN 122 +AVI++ V G+ PRH+ N L V + N Sbjct: 582 LNAVITESSSFDNGVPFKGKNATLTPRHSGNLWLTRELGEGLVVGGGANAVGARFANPGN 641 Query: 123 GYSLPGYVLTDVGVAYNAARWRTALNVKNIFNTQYYAGGL---ANAVALGDDRIVMLTLG 179 +LPGYV D AY +++ LN+ N+FNT Y G N G R V LTL Sbjct: 642 TVTLPGYVTVDAMAAYRTSKYEVQLNIGNLFNTGYIISGHGTNPNLSMPGAPRNVALTLR 701 Query: 180 Y 180 Y Sbjct: 702 Y 702 >gi|300312129|ref|YP_003776221.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 796 Score = 68.6 bits (166), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 9 NLNMALFDLRRRNVLQTDPNNTTFKIAVGEQHSQGGEIGITSDFRNGVSLMAGYSYTSAV 68 L AL+ + N +DP + F I+ G SQG E+ + G++++A Y+Y + V Sbjct: 626 ELTTALYHIDYTNQSISDPVHRGFYISTGGAVSQGLEVELKGQIMPGLNVIAQYAYNNYV 685 Query: 69 ISDDGGQKVTTNGQWLDNVPRHNFNTSARYRFKGE-LTGWELNGGV---HGQSRQRTNGY 124 KV N+P H + Y F+ L G+ + GV GQ T Y Sbjct: 686 QDYAPTVKV--------NLPHHTGSIWTTYNFRSPALQGFGVGMGVFMSSGQDVGSTGNY 737 Query: 125 SLPGYVLTDVGVAYNAARWRTALNVKNIFNTQYYAGGL-ANAVALGDDRIVMLTLGYRY 182 +PG TD+G+ Y ++ L+VKN+FN + Y+ A+ + +G +R +MLT Y + Sbjct: 738 HVPGQTETDLGLFYKMEKYSLNLSVKNLFNHKLYSSSTSASFIPMGPERTLMLTGTYDF 796 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 65.5 bits (158), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 11/178 (6%) Query: 12 MALFDLRRRNVLQTDPNNTTFKIAVGEQHSQGGEIGITSDFRNGVSLMAGYSYTSAVISD 71 +A+FD+ ++NVL TDP N F IA GE S+G E+ + + + +YT A +S Sbjct: 532 LAVFDITKQNVLTTDPANPNFSIAAGEVRSKGVELDANARLGHHWRVTGNLAYTDAYVSR 591 Query: 72 DGGQKVTTNGQWLDNVPRHNFNTSARYR-FKGELTGWELNGGVHGQSRQ---RTNGYSLP 127 D V G L N+PR + + A + + + GG++ R+ + + LP Sbjct: 592 DNTLPV---GSRLVNIPRSSASLLAVFEDADAHGAPYGVGGGLNYVGRRTGDQAGSFMLP 648 Query: 128 GYVLTDVGVAY--NAARWRTALNVKNIFNTQYYAGGLANA-VALGDDRIVMLTLGYRY 182 YV T +AY + + +L+V N+FN +YY+ + + GD+R L L ++ Sbjct: 649 SYV-TARALAYWQFTPKMKLSLDVNNLFNKRYYSSSYNSLWIMPGDERNATLALNIKF 705 >gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor protein [Herbaspirillum seropedicae SmR1] Length = 817 Score = 58.2 bits (139), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 79/179 (44%), Gaps = 14/179 (7%) Query: 11 NMALFDLRRRNVLQTDPNNTTFKIAVGEQHSQGGEIGITSDFRNGVSLMAGYSYTS-AVI 69 + ALFDL+R+N + D N GE +G E+ + + L A YSYT AV+ Sbjct: 646 SAALFDLKRQNYISYDAN--FMPTQKGEIAVRGLELEAVTQPMAALRLTAAYSYTPRAVV 703 Query: 70 SDDGGQKVTTNGQWLDNVPRHNFNTSARYRFKGELTGWELNGGVHGQSRQRTNG----YS 125 + + G+ V H F+ +R G L G S NG Sbjct: 704 T--ASSRPAEIGKQAAAVLLHQFSVWGDHRLG---NGVRLGLGARYVSATSGNGGGTPVK 758 Query: 126 LPGYVLTDVGVAYNAARWRTALNVKNIFNTQYY--AGGLANAVALGDDRIVMLTLGYRY 182 +PGY L D + Y+ ARW ALN++N+ + +Y A+ GD R V+ T YR+ Sbjct: 759 VPGYTLLDGLLGYDFARWSLALNLRNLTDKRYLTNCDTTASMCYYGDQRSVLATASYRW 817 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 608,274 Number of extensions: 25281 Number of successful extensions: 78 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 9 Length of query: 182 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 102 Effective length of database: 1,241,070 Effective search space: 126589140 Effective search space used: 126589140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)