BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0017.p (204 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisideropho... 209 1e-55 gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor prote... 85 3e-18 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 77 8e-16 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 74 6e-15 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 61 5e-11 >gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisiderophore receptor signal peptide protein, tonB-dependent receptor [Herbaspirillum seropedicae SmR1] Length = 715 Score = 209 bits (532), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/200 (56%), Positives = 145/200 (72%), Gaps = 12/200 (6%) Query: 1 MSGQLVANNALTATSQNLTRTGTDQTYNGQTFTMDTNLQRSFNTAAGKHQITFGSDYLNT 60 MSGQL++ N LT TS LTR+ DQT+ GQTFTMDTN+QRSF TA GKH++T G+DY+N+ Sbjct: 334 MSGQLISINNLTGTS--LTRSAMDQTFEGQTFTMDTNVQRSFATAWGKHEVTLGTDYMNS 391 Query: 61 REDVRSFACTVTAL-NVYNPVYGARLVCP----ATPGTNTSTTVRDLGIYLRDQIQFGDR 115 RE R+ C+VT L N+YNP YGAR+VCP +T T+VRD G Y RD+I G+R Sbjct: 392 RELERTLTCSVTPLSNIYNPSYGARVVCPTQLTSTNAKLNDTSVRDTGFYARDKISLGER 451 Query: 116 WQLLAGLRRDNASTYSDNIRTATHTDNPASANTGSVALMVEVLRGVRPYVSYSTSFYPNA 175 WQLLAG+R+D A+TY+ + T +H+DN +SA T S A+MVE+ GVRPY+SY+TSFYPN+ Sbjct: 452 WQLLAGVRQDRAATYTTSALTGSHSDNASSATTASAAIMVELWHGVRPYLSYATSFYPNS 511 Query: 176 GTA-----AIPSSRKQASSG 190 GTA P + KQ +G Sbjct: 512 GTAFDGSIFKPETGKQWETG 531 >gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor protein [Herbaspirillum seropedicae SmR1] Length = 817 Score = 85.1 bits (209), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 3/162 (1%) Query: 16 QNLTRTGTDQTYNGQTFTMDTNLQRSFNTAAGKHQITFGSDYLNTREDVRSFAC-TVTAL 74 QNLTR + F++D LQ F+T A +H + G DY +R D SF+ + L Sbjct: 452 QNLTRNLFGSRESATMFSIDNQLQADFSTGAVRHTVLAGVDYQRSRFDAVSFSGGSAPLL 511 Query: 75 NVYNPVY-GARLVCPATPGTNTSTTVRDLGIYLRDQIQFGDRWQLLAGLRRDNASTYSDN 133 N+ P Y V PA P ++ + GIYL+DQI++ + W++ G R D+AS+ DN Sbjct: 512 NIAAPSYPNGPFVVPA-PYSDNRAVLTQTGIYLQDQIKWNNGWEVTLGGRHDSASSTVDN 570 Query: 134 IRTATHTDNPASANTGSVALMVEVLRGVRPYVSYSTSFYPNA 175 + T + T A++ G+ PY+SY+ SF P A Sbjct: 571 RLDGSRTSSTDRKFTRRAAVLYHAANGLAPYLSYTESFNPTA 612 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 77.4 bits (189), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 84/191 (43%), Gaps = 9/191 (4%) Query: 7 ANNALTATSQNLTRTGTDQTYNGQT--FTMDTNLQRSFNTAAGKHQITFGSDYLNTREDV 64 A N T T LTR T YN Q +D L+ A +H + FG D+ + Sbjct: 329 ALNPGTLTGSVLTRGTT--VYNSQVDNTLVDNQLEGRLKWGATEHTVLFGLDWSRMYDRE 386 Query: 65 RSFACTVTALNVYNPVYGARLVCPATPGTNTSTTVRDLGIYLRDQIQFGDRWQLLAGLRR 124 + +LN+ NPVYG + T N + G+Y +DQI+F R L G R Sbjct: 387 VRYRGAAPSLNIDNPVYGVTIPAATTLFGNLEENMNQTGLYAQDQIKFDQRLTLTLGGRW 446 Query: 125 DNASTYSDNIRTATHTDNPASANTGSVALMVEVLRGVRPYVSYSTSFYPNAGT-----AA 179 D + N T T + SA +G + L V R + PYVSY+TSF P G+ Sbjct: 447 DKVKDETRNYFNRTTTRSDDSALSGRIGLSYLVTRDIAPYVSYATSFLPQTGSDFNGKPF 506 Query: 180 IPSSRKQASSG 190 P+ +QA G Sbjct: 507 DPTKARQAEVG 517 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 74.3 bits (181), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 15/193 (7%) Query: 10 ALTATSQNLTRTGTDQTYNGQTFTMDTNLQRSFNTAAGKHQITFGSDYLNTREDVRSFAC 69 AL A + L R + Y+ ++ + F TA H++ G++ D R Sbjct: 329 ALQADNATLRRQRRYRDYSWHDTSLQAEIGGKFATAGVGHEVLVGTEVDWLTLDQRMLRI 388 Query: 70 TVT-----ALNVYNPVYGARLVCPATPGTNTSTTVRDL--GIYLRDQIQFGDRWQLLAGL 122 + A+N+YNPVYG TP NT T+ R + G+YL+DQ+ +RW+LLAG+ Sbjct: 389 NPSNVAPYAVNIYNPVYGQ---AQPTPTANTDTSERQISTGLYLQDQLSLSERWRLLAGV 445 Query: 123 RRDNASTYSDNIRTATHTDNPASANTGSVALMVEVLRGVRPYVSYSTSFYPNAGT----- 177 R D + +N+R T A + + L + YVS S SF PN+G+ Sbjct: 446 RADAFRSTLNNLRNGAVTRQDKHAYSPRLGLTYLLTPSWSVYVSASKSFRPNSGSDVSGN 505 Query: 178 AAIPSSRKQASSG 190 A P + + A +G Sbjct: 506 AFSPETSRAAEAG 518 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 61.2 bits (147), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 2/148 (1%) Query: 47 GKHQITFGSDYLNTREDVRSFACTVTALNVYNPVYGARLVCPATPGTNTSTTVRDLGIYL 106 G H + G ++ + + R ++ A++ P P TP +LG+Y+ Sbjct: 379 GAHDLLLGVEHSWQKREPRLWSVAAPAVSAVTPENTRNGDDPTTPFQMNYHKASNLGLYV 438 Query: 107 RDQIQFGDRWQLLAGLRRDNASTYSDNIRTATHTDNPASANTGSVALMVEVLRGVRPYVS 166 +D+I W++LAGLR D S N R ++ A A + + ++ E L G Y+S Sbjct: 439 QDKITLAAHWKMLAGLRWDRFEVDSRNRRNGVRSERTAHALSPRIGVVWEALPGQHAYLS 498 Query: 167 YSTSFYPNAG--TAAIPSSRKQASSGKP 192 +S +F P G P +R + KP Sbjct: 499 WSKNFAPVGGDVIGITPDARGNFNDLKP 526 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 629,835 Number of extensions: 24684 Number of successful extensions: 88 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 8 Length of query: 204 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 123 Effective length of database: 1,236,335 Effective search space: 152069205 Effective search space used: 152069205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)