BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0016.p (110 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisideropho... 183 3e-48 gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore rece... 67 2e-13 gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor prote... 67 2e-13 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 62 1e-11 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 61 2e-11 >gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisiderophore receptor signal peptide protein, tonB-dependent receptor [Herbaspirillum seropedicae SmR1] Length = 715 Score = 183 bits (464), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 85/99 (85%), Positives = 93/99 (93%) Query: 5 EQLFGLEQVEVLKGPASLLYGLVLPGGLVNMVSKRPQGYDFANADVTVGSHDFRQATIDL 64 EQL+GL+QVEVLKGP SLLYGLVLPGGLVNMVSKRPQG DFAN DVT+GSHD Q+T+DL Sbjct: 149 EQLYGLQQVEVLKGPGSLLYGLVLPGGLVNMVSKRPQGSDFANVDVTIGSHDLYQSTVDL 208 Query: 65 NKSLSENGKQAFRINGLISNANDATDFVWYKNRYIAPSL 103 NKSLSENGKQAFRINGLISN++DATD VW+KNRYIAPSL Sbjct: 209 NKSLSENGKQAFRINGLISNSDDATDHVWFKNRYIAPSL 247 >gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 715 Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 2/94 (2%) Query: 10 LEQVEVLKGPASLLYGLVLPGGLVNMVSKRPQGYDFANADVTVGSHDFRQATIDLNKSLS 69 +E++E LKGPAS LYG PGG +N+V+K+PQ +A+V+ G+ R+AT+D LS Sbjct: 156 IERIEFLKGPASALYGSSEPGGTINIVTKKPQFSASNSAEVSAGTGGLRRATVDSTGPLS 215 Query: 70 ENGKQAFRINGLISNANDATDFVWYKNRYIAPSL 103 +N A+R+ + + + + + +APSL Sbjct: 216 QN--LAYRLIAMTEEGDSRSSLLSNRRSLVAPSL 247 >gi|300313794|ref|YP_003777886.1| ferrichrome-iron receptor protein [Herbaspirillum seropedicae SmR1] Length = 817 Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 56/96 (58%) Query: 8 FGLEQVEVLKGPASLLYGLVLPGGLVNMVSKRPQGYDFANADVTVGSHDFRQATIDLNKS 67 +G+EQ+ VL+GPAS+LYG PGG+VN+VSK P V +GS RQ D+ + Sbjct: 243 YGIEQLAVLRGPASVLYGQAGPGGVVNVVSKLPSADAPRELQVQLGSDRRRQVGADIGGA 302 Query: 68 LSENGKQAFRINGLISNANDATDFVWYKNRYIAPSL 103 + +G+ +R+ G++ +A + Y+APSL Sbjct: 303 IDADGRLLYRVIGVVRDAELPAGGMKNDRLYLAPSL 338 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 61.6 bits (148), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 4/95 (4%) Query: 10 LEQVEVLKGPASLLYGLVLPGGLVNMVSKRPQGYDFANA-DVTVGSHDFRQATIDLNKSL 68 +E V+ LKGPA+ LYG PGG +N+V+K+PQ + ANA D+++GS+D ++ +D +L Sbjct: 146 VESVDFLKGPAAALYGNSEPGGTINVVTKKPQ-FKSANALDLSIGSNDAYRSAVDSTGAL 204 Query: 69 SENGKQAFRINGLISNANDATDFVWYKNRYIAPSL 103 S A+R+N + + D V + + AP+ Sbjct: 205 SST--VAYRLNAAMEHKGSMRDQVRSEREFFAPAF 237 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 60.8 bits (146), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 8/111 (7%) Query: 6 QLFGLEQVEVLKGPASLLYGLVLPGGLVNMVSKRPQGYDFANA-DVTVGSHDFRQATIDL 64 + +G+E++EVL+GP S+ +G PGG++N VSK P G D N V +GS + +Q DL Sbjct: 144 ETYGMERIEVLRGPGSVTFGQADPGGVINRVSKLP-GMDIPNELGVDIGSFNRKQVVADL 202 Query: 65 NKSLSENGKQAFRINGLISNANDATDF----VWYKNR-YIAPSLXAPTSPS 110 N +++G+ +R+ GL ++N+ F NR Y+APSL S S Sbjct: 203 NGH-TQDGEYLWRVVGLGLDSNNQYKFNNGQSGDNNRFYLAPSLTWRPSAS 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 279,437 Number of extensions: 8126 Number of successful extensions: 39 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 11 Length of query: 110 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 37 Effective length of database: 1,274,215 Effective search space: 47145955 Effective search space used: 47145955 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)