BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0015.p
         (91 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisideropho...   123   3e-30
gi|300312129|ref|YP_003776221.1| TonB-dependent ferric sideropho...    58   2e-10
gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane i...    55   1e-09

>gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisiderophore
           receptor signal peptide protein, tonB-dependent receptor
           [Herbaspirillum seropedicae SmR1]
          Length = 715

 Score =  123 bits (308), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/84 (71%), Positives = 72/84 (85%)

Query: 1   LPAVNVTADGDGENRYSAVKAQVNKSSVPLSQTPLSISVVPRAVLDSQQAVTLADALKNA 60
           LP V+VTADG  ++++ A + QVNKSS PLS+TP SISVV RA++DSQQAV+L+DALKN 
Sbjct: 48  LPTVSVTADGYTDSKFKATQTQVNKSSTPLSETPQSISVVTRAMMDSQQAVSLSDALKNV 107

Query: 61  PGVVSGQYGRRGWDDLIIRGQVAS 84
            GVV+ QYGRRGWDDLIIRGQVAS
Sbjct: 108 SGVVAQQYGRRGWDDLIIRGQVAS 131


>gi|300312129|ref|YP_003776221.1| TonB-dependent ferric siderophore
           receptor protein [Herbaspirillum seropedicae SmR1]
          Length = 796

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 1   LPAVNV--TADGDGENRYSAVKAQVNKSSVPLSQTPLSISVVPRAVLDSQQAVTLADALK 58
           LP ++V  TAD  G    +   A  +++  PLS+TP S+SV+  AV+ SQ A TL+D L+
Sbjct: 136 LPLISVAATADSGGTGFVAESSATFSRTDTPLSETPKSVSVINAAVIQSQSAQTLSDVLR 195

Query: 59  NAPGVVSGQYGRRGWDDLIIRGQVASA 85
           NA GVV+ + G  G     IRG V +A
Sbjct: 196 NASGVVA-RPGPYGVPSFAIRGYVGNA 221


>gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane iron
           monomeric catechols receptor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 799

 Score = 54.7 bits (130), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 1   LPAVNVTADGDGENRYSAVKAQVNKSSVPLSQTPLSISVVPRAVLDSQQAVTLADALKNA 60
           LP+V VTA    E  Y A KA   K + PL  TP +++V+ R ++D Q A TL +AL+N+
Sbjct: 72  LPSVEVTASQ--EPAYKADKASSAKYTQPLVDTPQTLTVIKRQLIDQQGATTLTEALRNS 129

Query: 61  PGVVSGQYGRRG----WDDLIIRG 80
           PGV +   G  G     D + +RG
Sbjct: 130 PGVGTFSLGENGATNTGDAIYMRG 153


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 297,216
Number of extensions: 9761
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 3
Length of query: 91
Length of database: 1,619,870
Length adjustment: 61
Effective length of query: 30
Effective length of database: 1,331,035
Effective search space: 39931050
Effective search space used: 39931050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)