BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0010.p (195 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 343 8e-96 gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm... 210 5e-56 gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 188 3e-49 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 176 1e-45 gi|300309585|ref|YP_003773677.1| amino acid ABC transporter perm... 174 6e-45 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 343 bits (879), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 180/192 (93%), Positives = 188/192 (97%) Query: 1 VGIFGAIVSIHGSAPARFAVTSYVELIRSTPFLVQLFIIFFGLPAAGVQVDANVAALVAM 60 VGIFGAI+SIHGS PAR AVTSYVELIRSTPFLVQLFIIFFGLP+ GVQVDAN+AALVAM Sbjct: 38 VGIFGAIISIHGSKPARLAVTSYVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAM 97 Query: 61 TVNLGAYSTEIVRAGMMAVHPSQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTL 120 TVNLGAYSTEIVRAGMMA+HPSQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTL Sbjct: 98 TVNLGAYSTEIVRAGMMAIHPSQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTL 157 Query: 121 MMLASSVVSAISAEELTASANLLDAETFRSFEIYLIVMGLYILLALLFRLSFWLIGLVVF 180 MMLASS+VSAISAEELTA+ANLLDAETFRSFEIYL+VM LYILLALLFRL+FWLIGLVVF Sbjct: 158 MMLASSIVSAISAEELTATANLLDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVF 217 Query: 181 KRRRRLGVARPR 192 KRRRRLGVARPR Sbjct: 218 KRRRRLGVARPR 229 >gi|300313166|ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 210 bits (535), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 103/187 (55%), Positives = 142/187 (75%) Query: 1 VGIFGAIVSIHGSAPARFAVTSYVELIRSTPFLVQLFIIFFGLPAAGVQVDANVAALVAM 60 VG AI A R V +YVE+IR+TP LVQ+F++FFGL + G ++ A AA++A+ Sbjct: 38 VGTLCAIAGKSRLALVRGLVLAYVEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIAL 97 Query: 61 TVNLGAYSTEIVRAGMMAVHPSQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTL 120 TVN+GAY+TEI+RAG+ ++HP QIEAA+ L M+R+ V HVVL PA+E+VYP+L SQF L Sbjct: 98 TVNVGAYTTEIMRAGINSIHPGQIEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFIL 157 Query: 121 MMLASSVVSAISAEELTASANLLDAETFRSFEIYLIVMGLYILLALLFRLSFWLIGLVVF 180 +MLASS+ S ISAEELTA+ANL+ +ETFRSFE+Y ++ Y++L+ LFR +FW I + F Sbjct: 158 LMLASSITSQISAEELTATANLVQSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAF 217 Query: 181 KRRRRLG 187 R+R+LG Sbjct: 218 VRKRKLG 224 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 188 bits (477), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 93/184 (50%), Positives = 129/184 (70%) Query: 1 VGIFGAIVSIHGSAPARFAVTSYVELIRSTPFLVQLFIIFFGLPAAGVQVDANVAALVAM 60 VGIFGA G + V+ YVE+IR+TPFLVQLF IFFGLP+ + + AA+VAM Sbjct: 38 VGIFGAWARTQGPGWLKPVVSGYVEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAM 97 Query: 61 TVNLGAYSTEIVRAGMMAVHPSQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTL 120 +NLGAYSTEI+RAG+ A+ QIEAAQ+L+M+R Q+ RH++L PAL+K++PAL+SQ + Sbjct: 98 VINLGAYSTEIIRAGVQAIPRGQIEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVI 157 Query: 121 MMLASSVVSAISAEELTASANLLDAETFRSFEIYLIVMGLYILLALLFRLSFWLIGLVVF 180 +ML S+V S I+ EEL+ +AN + FR+FE Y++ +Y++LA+L R LIG Sbjct: 158 VMLGSAVCSQIAVEELSFAANFIQGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFI 217 Query: 181 KRRR 184 RR Sbjct: 218 TARR 221 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 176 bits (445), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 96/198 (48%), Positives = 143/198 (72%), Gaps = 6/198 (3%) Query: 1 VGIFGAIVSIHGSAPARF---AVTSYVELIRSTPFLVQLFIIFFGLPAAGVQVDANVAAL 57 +GIF V+ ++P R+ ++Y+E++R+TPFLVQ+F+++FGL + G+++ AA+ Sbjct: 38 IGIF---VAFAKNSPHRWLARGCSAYIEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAV 94 Query: 58 VAMTVNLGAYSTEIVRAGMMAVHPSQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQ 117 +AM +N+ AY+ EI+RAG+ +V QIEAAQ L ++ W++ HV+L PA+E+VYPAL SQ Sbjct: 95 LAMIINIAAYAAEIIRAGLDSVPRGQIEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQ 154 Query: 118 FTLMMLASSVVSAISAEELTASANLLDAETFRSFEIYLIVMGLYILLALLFRLSFWLIGL 177 F LMM AS++ S ISAEELTA AN + ++TFRS E YL+V LY++LA+L +L + IG Sbjct: 155 FLLMMQASAMASQISAEELTAIANTVQSDTFRSLETYLVVAALYLVLAILVKLVAYAIGE 214 Query: 178 VVFKRRRRLGVARPRGNR 195 +FKRRR L A +G R Sbjct: 215 TIFKRRRTLRRAAAQGRR 232 >gi|300309585|ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 174 bits (440), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 89/171 (52%), Positives = 125/171 (73%) Query: 17 RFAVTSYVELIRSTPFLVQLFIIFFGLPAAGVQVDANVAALVAMTVNLGAYSTEIVRAGM 76 R AV+ YVELIR+TP L+Q + + FGL + GV + A +A+ +N+GAYS EIVRAG+ Sbjct: 54 RAAVSGYVELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGL 113 Query: 77 MAVHPSQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSVVSAISAEEL 136 ++H Q+EAA L ++ QV HVVL PA+E+V+PAL SQF LMMLASS++S++ AEEL Sbjct: 114 ESIHHGQLEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEEL 173 Query: 137 TASANLLDAETFRSFEIYLIVMGLYILLALLFRLSFWLIGLVVFKRRRRLG 187 AN + ++TFR+FE++L++ Y+ LA L R FWL+G +VF RRR+LG Sbjct: 174 LGVANRVQSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLG 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 423,179 Number of extensions: 14118 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 20 Length of query: 195 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 115 Effective length of database: 1,241,070 Effective search space: 142723050 Effective search space used: 142723050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)