BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0003.p
         (158 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310831|ref|YP_003774923.1| 2-ketogluconate kinase [Herbasp...   235   1e-63

>gi|300310831|ref|YP_003774923.1| 2-ketogluconate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  235 bits (600), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 120/142 (84%)

Query: 1   VATDKEFRTAIQLKAKAVDGGDPAIEYYRKGSAASHLSQVDFDEAYFGGARHLHTTGIAA 60
           V TD EFRTAIQLKAKAV G DPAIEYYRKGSAASHLS  DFD  YFG ARHLH TGIA 
Sbjct: 82  VITDMEFRTAIQLKAKAVGGADPAIEYYRKGSAASHLSVDDFDAGYFGAARHLHATGIAP 141

Query: 61  ALSPTTMAFAHHALDFMRARGKTISFDPNLRPMLWPSQEVMAQKLNELAFKADWVLPGLS 120
           ALS TTMAFAH A+DFMR +GKTISFDPNLRPMLWPSQEVMAQ+LN LAFKADWVLPGLS
Sbjct: 142 ALSATTMAFAHQAMDFMRGQGKTISFDPNLRPMLWPSQEVMAQQLNALAFKADWVLPGLS 201

Query: 121 EGKILTGHSEPRDIAYCAAPRG 142
           EGKILTGH + R+IA     RG
Sbjct: 202 EGKILTGHDDAREIAGFYLERG 223


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 485,667
Number of extensions: 19096
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,250,540
Effective search space: 100043200
Effective search space used: 100043200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)