BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0001.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310834|ref|YP_003774926.1| electron transfer flavoprotein ...   402   e-113
gi|300312146|ref|YP_003776238.1| electron transfer flavoprotein ...   132   2e-32

>gi|300310834|ref|YP_003774926.1| electron transfer flavoprotein
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  402 bits (1033), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/218 (92%), Positives = 209/218 (95%)

Query: 14  TAYGKNILPRVAARLDVAQISEITKVDSPNTFARPIYAGNAIATVQSTDAIKVITVRTTG 73
           TAYGKNILPRVAA+LDV QIS+ITKV+S +TF RPIYAGNAIATVQS D IKVITVRTTG
Sbjct: 92  TAYGKNILPRVAAKLDVGQISDITKVESADTFERPIYAGNAIATVQSIDPIKVITVRTTG 151

Query: 74  FDAAATGGSAAVESLTAVADSGKSSFVSREVAKSDRPELTAAKIIVSGGRGMGSSESFKI 133
           FD AA GGSAAVES+ AVADSGKSSFV REVAKSDRPELTAAKIIVSGGRGMGS+ESFKI
Sbjct: 152 FDPAAQGGSAAVESIPAVADSGKSSFVGREVAKSDRPELTAAKIIVSGGRGMGSAESFKI 211

Query: 134 LEPLADKLNAAMGASRAAVDAGYVPNDWQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDS 193
           LEPLADKLNAAMGASRAAVDAGYVPNDWQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDS
Sbjct: 212 LEPLADKLNAAMGASRAAVDAGYVPNDWQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDS 271

Query: 194 KVIVAINKDEEAPIFSVADYGIVGDLFEVVPELVKQLG 231
           KVIVAINKDEEAPIFSVADYG+VGDLFEVVPELVKQLG
Sbjct: 272 KVIVAINKDEEAPIFSVADYGLVGDLFEVVPELVKQLG 309


>gi|300312146|ref|YP_003776238.1| electron transfer flavoprotein
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  132 bits (333), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 129/228 (56%), Gaps = 15/228 (6%)

Query: 14  TAYGKNILPRVAARLDVAQISEIT--KVDSPN---TFARPIYAGNAIATVQSTDAI-KVI 67
           TA G+++   VA  L     ++ T   +D  N     +RP + G+ + T+ + +   ++ 
Sbjct: 126 TAQGRDLAGSVATTLKTGLTADCTGLTIDMENRSMAASRPTFGGSLLCTILTLNYRPQMA 185

Query: 68  TVRTTGF-----DAAATGGSAAVESLTAVADSGKSSFVSREV--AKSDRPELTAAKIIVS 120
           TVR         D + +G    +E    + +S   + V   +   + D+P+L  A IIV+
Sbjct: 186 TVRPRVMAMPEPDRSRSG--QIIEHPLCLVESDIITKVLEYIPDNQQDKPQLPFADIIVA 243

Query: 121 GGRGMGSSESFKILEPLADKLNAAMGASRAAVDAGYVPNDWQVGQTGKIVAPQLYIAVGI 180
           GGRGM  +E+F+++  LA  L A +GA+R  V A +V  + QVGQ+GK V P+LYIA GI
Sbjct: 244 GGRGMKRAENFQLIWDLAMVLGAEVGATRPVVQANWVQAERQVGQSGKTVRPKLYIAAGI 303

Query: 181 SGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGIVGDLFEVVPELVK 228
           SGAIQH  GM DS VI+AIN D  APIF  A YGIVG+   ++P L +
Sbjct: 304 SGAIQHRVGMADSDVIIAINSDPNAPIFDFASYGIVGNAMTILPALTE 351


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 722,352
Number of extensions: 29484
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)