BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0040.0005.p
         (120 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   179   5e-47
gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   118   2e-28

>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  179 bits (454), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/92 (94%), Positives = 89/92 (96%)

Query: 1   VPEISKIANVRGEQIFQIGSESFNDERLLKLGKRVSELLKQSDVDGIVITHGTDTIEETA 60
           VPEISKIANVRGEQIFQIGSESFNDERL+KLGKRVSELLKQ+DVDGIVITHGTDTIEETA
Sbjct: 68  VPEISKIANVRGEQIFQIGSESFNDERLIKLGKRVSELLKQNDVDGIVITHGTDTIEETA 127

Query: 61  YFLNLTLKSSKPVVVVGSMRPGTALGADGRLN 92
           YFLNL LKS KPVVVVGSMRPGTALGADG LN
Sbjct: 128 YFLNLVLKSDKPVVVVGSMRPGTALGADGALN 159


>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
          Glu-tRNAGln amidotransferase subunit D protein
          [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  118 bits (295), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 65/77 (84%)

Query: 16 FQIGSESFNDERLLKLGKRVSELLKQSDVDGIVITHGTDTIEETAYFLNLTLKSSKPVVV 75
           QI SE+ N++  LKLGKRV+ LL QSDVDGIVITHGTDTIEETAYFL+L +KS KPVV+
Sbjct: 1  MQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 60

Query: 76 VGSMRPGTALGADGRLN 92
          VG+MRP TA+ ADG +N
Sbjct: 61 VGAMRPSTAISADGPIN 77


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 315,705
Number of extensions: 11031
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 120
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,269,480
Effective search space: 58396080
Effective search space used: 58396080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)