BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0040.0004.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   347   4e-97
gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   205   3e-54

>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  347 bits (891), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 165/214 (77%), Positives = 187/214 (87%)

Query: 26  SSVRSPAYQSAVVPVDRIIAAVPDIAKVANVSGEQIFQVPSESFNDERLIKLGKRLAELL 85
           SSV + AYQSAVVPVD+IIAAVP+I+K+ANV GEQIFQ+ SESFNDERLIKLGKR++ELL
Sbjct: 47  SSVNTAAYQSAVVPVDKIIAAVPEISKIANVRGEQIFQIGSESFNDERLIKLGKRVSELL 106

Query: 86  RQRDVDGIVVTHGVDTIEETAYFLNLTLKSRKPVVLVGAMRPGTALSSDGALNLYEAVLV 145
           +Q DVDGIV+THG DTIEETAYFLNL LKS KPVV+VG+MRPGTAL +DGALNLY+AVLV
Sbjct: 107 KQNDVDGIVITHGTDTIEETAYFLNLVLKSDKPVVVVGSMRPGTALGADGALNLYDAVLV 166

Query: 146 ASSKEAAGKGTLVVMNNEIHSGRDVTMNDAVKTNTLRSPYGPLGLVIEGKVMFYRQPTRP 205
           A SKEAAGKGTLVVMN+EIHSGRDVT ++  K  T RSPYGPLG V+E K+ FYR P RP
Sbjct: 167 AGSKEAAGKGTLVVMNDEIHSGRDVTKSNTFKVETFRSPYGPLGYVVENKLSFYRLPARP 226

Query: 206 HTMTSEFDIDKLSTLPRVDIVYNYGNVSPAASSA 239
           HT  +EFDIDK+S+LPRVDIVYNYGNVS  A  A
Sbjct: 227 HTTQTEFDIDKISSLPRVDIVYNYGNVSRTAYDA 260


>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  205 bits (521), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 133/179 (74%), Gaps = 1/179 (0%)

Query: 62  FQVPSESFNDERLIKLGKRLAELLRQRDVDGIVVTHGVDTIEETAYFLNLTLKSRKPVVL 121
            Q+ SE+ N++  +KLGKR+  LL Q DVDGIV+THG DTIEETAYFL+L +KS+KPVV+
Sbjct: 1   MQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 60

Query: 122 VGAMRPGTALSSDGALNLYEAVLVASSKEAAGKGTLVVMNNEIHSGRDVTMNDAVKTNTL 181
           VGAMRP TA+S+DG +NLY AVL+A SKEA GKG LV +N++I++GR+VT  +    +T 
Sbjct: 61  VGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREVTKTNTSTLDTF 120

Query: 182 RSP-YGPLGLVIEGKVMFYRQPTRPHTMTSEFDIDKLSTLPRVDIVYNYGNVSPAASSA 239
           ++P  G LG +   K  FYRQ TR +T+ + FDI  L  LP+VDIVY Y N++P A +A
Sbjct: 121 KTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNA 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 697,003
Number of extensions: 27403
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)