BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0040.0003.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   365   e-103
gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   214   4e-57

>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  365 bits (938), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/193 (90%), Positives = 182/193 (94%)

Query: 1   VLVASSKDAAGKGTLVVMNDEIHSGRDVTKTNSFKVETFRSPYGPLGYVVEGKLMFYRLP 60
           VLVA SK+AAGKGTLVVMNDEIHSGRDVTK+N+FKVETFRSPYGPLGYVVE KL FYRLP
Sbjct: 164 VLVAGSKEAAGKGTLVVMNDEIHSGRDVTKSNTFKVETFRSPYGPLGYVVENKLSFYRLP 223

Query: 61  ARPHTTQTEFDIDKINSLPRVDIAYNYGNVSRAAYDAFVTAGAKAIIHDGTGNGSVAEQI 120
           ARPHTTQTEFDIDKI+SLPRVDI YNYGNVSR AYDAFV AGAKAIIHDGTGNGSVAEQI
Sbjct: 224 ARPHTTQTEFDIDKISSLPRVDIVYNYGNVSRTAYDAFVAAGAKAIIHDGTGNGSVAEQI 283

Query: 121 VPVLQEVRSKGLQVVRATRTGSGVVIRNGEQNDDKFDWVVTDDQNPQKARILTALALTKT 180
           VPVLQEVRSKG+QV+RA+RTGSGVVIRNGEQ DDKFDWVVTDDQN QKARIL  LALTKT
Sbjct: 284 VPVLQEVRSKGVQVIRASRTGSGVVIRNGEQPDDKFDWVVTDDQNAQKARILAELALTKT 343

Query: 181 NDSKELQKILWKY 193
           ND KELQKI+WKY
Sbjct: 344 NDPKELQKIMWKY 356


>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  214 bits (545), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/194 (53%), Positives = 140/194 (72%), Gaps = 1/194 (0%)

Query: 1   VLVASSKDAAGKGTLVVMNDEIHSGRDVTKTNSFKVETFRSP-YGPLGYVVEGKLMFYRL 59
           VL+A SK+A GKG LV +ND+I++GR+VTKTN+  ++TF++P  G LGY+   K  FYR 
Sbjct: 82  VLLAGSKEAIGKGVLVTLNDQINAGREVTKTNTSTLDTFKTPELGFLGYIQGSKPYFYRQ 141

Query: 60  PARPHTTQTEFDIDKINSLPRVDIAYNYGNVSRAAYDAFVTAGAKAIIHDGTGNGSVAEQ 119
             R +T  T FDI  ++ LP+VDI Y Y N++  A +AFV AGA+ IIH G G+GS+   
Sbjct: 142 STRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAFVAAGAQGIIHAGVGDGSLNNT 201

Query: 120 IVPVLQEVRSKGLQVVRATRTGSGVVIRNGEQNDDKFDWVVTDDQNPQKARILTALALTK 179
           +VP L E R KG+ +VR++R G G+V RNGE +DDK D+VV+D  N QKARIL  LALTK
Sbjct: 202 VVPSLTEARKKGVVIVRSSRVGQGIVARNGEADDDKLDFVVSDTLNAQKARILLMLALTK 261

Query: 180 TNDSKELQKILWKY 193
           T D+KE+QK+ W+Y
Sbjct: 262 TTDTKEIQKMFWEY 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 596,840
Number of extensions: 24064
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)