BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0003.p
         (526 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas...   108   1e-24

>gi|300312733|ref|YP_003776825.1| multidrug ABC transporter
           ATPase/permease [Herbaspirillum seropedicae SmR1]
          Length = 614

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 100/197 (50%), Gaps = 33/197 (16%)

Query: 230 ARCALAAFRCETEIARRRQQDVEHAVFGGVFGT-------RTHLADFAFTGLLDADVDQV 282
           A   + AF  E   ARR  Q VE A     FGT       R+ L   A   +  A V  +
Sbjct: 239 AMPTVQAFTHEEIEARRFAQSVERA-----FGTAMERVRARSLLTVVAILLVFGAIVFVL 293

Query: 283 TNDGVDVAADVADFGELGRF----DLDEGRVGQLGQATGDFSFTDAGGADHEDVLGRDLV 338
                 V       GELG+F     L  G +G L +  GD     A GA           
Sbjct: 294 WLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQ--RAAGAT---------- 341

Query: 339 AQRLLDLLAAQSPVQSVLLPETLPASLSSCTANGAALQLEDVVFHYPSRPDSNALMHLSL 398
            +RLLDLLAA SPVQSVLLPE LP      TANGAAL ++ V FHYPSRP   +L  LSL
Sbjct: 342 -ERLLDLLAAHSPVQSVLLPEKLPPR----TANGAALTVQGVDFHYPSRPGHPSLTQLSL 396

Query: 399 DIKPGETIAVVGPSGAG 415
            ++PGET+A+VGPSGAG
Sbjct: 397 TVQPGETVAIVGPSGAG 413


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,573,918
Number of extensions: 65230
Number of successful extensions: 289
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 436
Effective length of database: 1,193,720
Effective search space: 520461920
Effective search space used: 520461920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 133 (55.8 bits)