BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0066.p
         (80 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t...    67   3e-13
gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC t...    59   6e-11

>gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 394

 Score = 67.0 bits (162), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 51/78 (65%)

Query: 2   EMLPFAAYAYDSVHVLVAAAKKANSLDRGKIVDALHEIKYSGITGTISFDANGTLLKPAY 61
           +M  +A +AY++   ++   ++A S D  +I +A+H +++ G++G ++F+  G LL+P++
Sbjct: 313 DMDLYAVFAYEAAQAIIQGIRQAGSADPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSF 372

Query: 62  TLYSMEQQKWVPLRVFTA 79
           T+Y ++ Q+W P+  F  
Sbjct: 373 TMYEVKDQRWQPVARFNG 390


>gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 385

 Score = 59.3 bits (142), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 6   FAAYAYDSVHVLVAAAKKANSLDRGKIVDALHEIKYSGITGTISFDANGTLLKPAYTLYS 65
           ++ YAYD+  VL AA  +A S +  KI  ALH ++++G+ GT+SFDA G    P YTL  
Sbjct: 302 YSFYAYDAASVLTAAIVQAGSDNGDKIATALHRMRHAGLHGTLSFDATGANAHPRYTLLR 361

Query: 66  MEQQKWVPLRVF 77
             Q++W  + VF
Sbjct: 362 Y-QERWQAVEVF 372


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 234,759
Number of extensions: 7420
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 1,619,870
Length adjustment: 51
Effective length of query: 29
Effective length of database: 1,378,385
Effective search space: 39973165
Effective search space used: 39973165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)