BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0059.p
         (89 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310439|ref|YP_003774531.1| transketolase alpha subunit [He...   132   4e-33
gi|300309841|ref|YP_003773933.1| transketolase [Herbaspirillum s...    52   7e-09

>gi|300310439|ref|YP_003774531.1| transketolase alpha subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  132 bits (333), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 61/83 (73%), Positives = 66/83 (79%)

Query: 1   VLNFEPLADKWQAFGWYVQRVDGNNLKEVVAAFDRARVLAEDKPRVIICDTKMCKGVPFL 60
           ++ FEPLADKW AFGWYVQRVDGN+L  VV AFD AR L + KPRVI+ DT M KGVPFL
Sbjct: 189 IMGFEPLADKWAAFGWYVQRVDGNDLAAVVQAFDNARNLKDAKPRVILFDTLMGKGVPFL 248

Query: 61  EGREKNHFIRVDPEEWQLALDTL 83
           E REKNHFIRVDP EWQ AL  L
Sbjct: 249 EQREKNHFIRVDPPEWQQALSIL 271


>gi|300309841|ref|YP_003773933.1| transketolase [Herbaspirillum
           seropedicae SmR1]
          Length = 664

 Score = 52.4 bits (124), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 5   EPLADKWQAFGWYVQRVDGNNLKEVVAAFDRARVLAEDKPRVIICDTKMCKGVPFLEGRE 64
           E +A++++  GW+V  VDG++++ V  A D A+    D+P +I C T + +G+P ++G+ 
Sbjct: 199 ENVAERFRVAGWHVVEVDGHDIQAVSRALDAAQ--GSDRPSMIACRTVIGRGIPRVQGQR 256

Query: 65  KNHFIRVDPEEWQLALDTL 83
             H  R+  ++ Q A + L
Sbjct: 257 GGHSARLYEDDAQAARELL 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 286,184
Number of extensions: 9298
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 89
Length of database: 1,619,870
Length adjustment: 59
Effective length of query: 30
Effective length of database: 1,340,505
Effective search space: 40215150
Effective search space used: 40215150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)