BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0047.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309771|ref|YP_003773863.1| thiamine monophosphate synthase...   210   1e-55

>gi|300309771|ref|YP_003773863.1| thiamine monophosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  210 bits (534), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 123/143 (86%)

Query: 9   LRGLYIVTPDWDETGKLVDATEQAIRGGAKLVQYRHKTAAADLRKEQASALLQVCRRHDT 68
           LRGLYIVTPDWD+T +L+ ATE A++ GA LVQYRHKTA A  R+ QASALL +CR++  
Sbjct: 9   LRGLYIVTPDWDDTAQLLAATELALQQGAALVQYRHKTADAQQRQAQASALLALCRQYQV 68

Query: 69  PFIINDHVDLCLELDAEGIHVGGTDASVADVRARVGKDKIVGASCYGTLQLARDAYAAGA 128
           P IINDHVDLCL++DA+GIHVGGTDAS+A+VR  VG D+IVGASCYGTL+LA  AY  GA
Sbjct: 69  PLIINDHVDLCLDIDADGIHVGGTDASIAEVRKAVGPDRIVGASCYGTLELAHAAYRDGA 128

Query: 129 TYVAFGGFYPSRVKKYDFRTAPE 151
           +YVAFGGFYPSRVKKYDFRTAPE
Sbjct: 129 SYVAFGGFYPSRVKKYDFRTAPE 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 824,653
Number of extensions: 36869
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)