BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0041.p
         (373 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310560|ref|YP_003774652.1| S-adenosylmethionine:tRNA-ribos...   567   e-163

>gi|300310560|ref|YP_003774652.1|
           S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
           (queuine synthetase)protein [Herbaspirillum seropedicae
           SmR1]
          Length = 338

 Score =  567 bits (1462), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/340 (81%), Positives = 303/340 (89%), Gaps = 4/340 (1%)

Query: 25  MYSLSDFDFDLPPGLIAQLPLPERSASRLLQVDAQSGSLALTDRRFADVVDLLAPGDLLV 84
           MYSLSDFDF+LPP LIAQ PL ERSASRLLQV        LTDRRF+D+VDLL  GDLLV
Sbjct: 1   MYSLSDFDFELPPELIAQTPLAERSASRLLQVQGAQ----LTDRRFSDIVDLLQAGDLLV 56

Query: 85  FNNTRVLKARFFGLKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGTGIRLADAFDVVV 144
           FN+TRV+KAR FG+KETGGK+E LVER+LD R+VHAQVRASKSPPPGT IRLADAF+V V
Sbjct: 57  FNDTRVIKARLFGVKETGGKIEALVERILDPRTVHAQVRASKSPPPGTRIRLADAFEVTV 116

Query: 145 GERYGEFYTLQFPSDVFELLEQYGSLPLPPYIEHAADEFDEARYQTVYAKEPGAVAAPTA 204
           GER+GEFYTL FP D F LLEQYGSLPLPPYI+H AD +DE RYQTVYAKEPGAVAAPTA
Sbjct: 117 GERFGEFYTLHFPEDAFALLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTA 176

Query: 205 GLHFDEALLAQLKAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVR 264
           GLHFD+ALL QL A+G+  AFVTLHVGAGTFQPVRVEDLS+HKMHSEWYTI  ETV+ VR
Sbjct: 177 GLHFDQALLEQLAARGVQQAFVTLHVGAGTFQPVRVEDLSQHKMHSEWYTIPPETVEAVR 236

Query: 265 AVKAAGGKIVAVGTTSMRALESASQSGALEAGSADTKLFITPGYTFKTVDRLITNFHLPK 324
           A KAAG +++AVGTTSMRALES SQSGAL+AGS DT+LFITPGYTFKTVD+L+TNFHLPK
Sbjct: 237 AAKAAGRRVIAVGTTSMRALESGSQSGALKAGSDDTQLFITPGYTFKTVDQLVTNFHLPK 296

Query: 325 STLLMLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLLT 364
           STLLMLVSAFAGY+ IRAAYAHAIAQ+YRFFSYGDAMLLT
Sbjct: 297 STLLMLVSAFAGYELIRAAYAHAIAQKYRFFSYGDAMLLT 336


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,133,300
Number of extensions: 46505
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,207,925
Effective search space: 345466550
Effective search space used: 345466550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)