BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0038.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310362|ref|YP_003774454.1| galactonate dehydratase [Herbas...   111   7e-26

>gi|300310362|ref|YP_003774454.1| galactonate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score =  111 bits (277), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 117/244 (47%), Gaps = 26/244 (10%)

Query: 29  FXAVDMALWDIKGKAANLPVYQLLGGKSRDAVMVYGHANGRDHAEALDAVGHYIDMGYKA 88
              +D ALWDIKGK   +PV+QLLGG  R+++ VY    G   A+   A    +  G+ A
Sbjct: 83  LAGIDQALWDIKGKDLGVPVHQLLGGAVRNSIRVYSWIGGDRPADTAAAAKSAVARGFTA 142

Query: 89  IRVQSGVPGLDKAYGVGKGNMYYEPADKGLPDEEIWDTPLYLRHTPDLFEKVRVKYGSDH 148
           +++                         G  + +  D+   +  T    + VR   G + 
Sbjct: 143 VKMN------------------------GTEELQFIDSHDKIELTLANVQAVREAVGPNV 178

Query: 149 HLLHDCHHRLKPIEAAQLGKSLEQFKLFWMEDATPAENQEAFRLIRQHTTTPLAVGEIMS 208
            +  D H R+    A  L K LE +KL ++E+   +EN EA + I   T+TP+A+GE + 
Sbjct: 179 GIGVDFHGRVHKPMAKALIKELEPYKLMFIEEPVLSENAEALKEIAHLTSTPIALGERLY 238

Query: 209 SIWDCKDLIQNQLIDYIRTTVVHAGGITHLRRIADLASLYQVHTGCHGATDLSPVSMAAA 268
           S WD K ++    +D I+  V HAGGIT  R+IA +A  Y V    H    L P+++A+ 
Sbjct: 239 SRWDFKRILSEGYVDIIQPDVSHAGGITETRKIAMMAEAYDVALALH--CPLGPIALASC 296

Query: 269 LNFN 272
           L  +
Sbjct: 297 LQVD 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 908,483
Number of extensions: 36752
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)