BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0036.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312626|ref|YP_003776718.1| GntR family transcription regul...    75   3e-15
gi|300309587|ref|YP_003773679.1| GntR family transcription regul...    58   2e-10
gi|300312613|ref|YP_003776705.1| transcription regulator protein...    55   2e-09

>gi|300312626|ref|YP_003776718.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score = 74.7 bits (182), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 63/107 (58%)

Query: 1   VIESEVAALAAQNRTDADIDKIYAQLAAMGRNFNDKLANEADDRLFHIRIAEASGNSVMA 60
           +IE EVA  AAQ+ +   I  +    A M  N    +     DRLFHIR+AEA+GNSV+ 
Sbjct: 101 MIEGEVAYAAAQHGSKQQIAAVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLV 160

Query: 61  QVVTALWDQLRGVLWKKLEEHFHTPQLREASLEEHQKVFDALVARDP 107
            +VT L+D   G L+K+L  HF   ++ + +++EH  V +AL  R+P
Sbjct: 161 GLVTQLFDARLGPLFKRLHSHFDGTRVWQEAIDEHALVMEALRQRNP 207


>gi|300309587|ref|YP_003773679.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 54/109 (49%)

Query: 1   VIESEVAALAAQNRTDADIDKIYAQLAAMGRNFNDKLANEADDRLFHIRIAEASGNSVMA 60
           + E  + AL A      DI  + A    M R      +  A DR FHIRIA  +GN V+ 
Sbjct: 116 IFEGAIVALVAPLAKPRDIKALRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLV 175

Query: 61  QVVTALWDQLRGVLWKKLEEHFHTPQLREASLEEHQKVFDALVARDPVH 109
           Q V  L+D+ +  +  KL +H+        +L EH+++ +A+ ARD + 
Sbjct: 176 QTVARLYDERQDPISAKLLDHYEPEDSWLTALHEHREILEAIEARDAIQ 224


>gi|300312613|ref|YP_003776705.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score = 55.1 bits (131), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 11/132 (8%)

Query: 1   VIESEVAALAAQNRTDADIDKIYAQLAAMGRNFNDKLANEADDRLFHIRIAEASGNSVMA 60
           +IE+ VAALAA +  DA++D++   +    R  +D  A  A D  FH  I EA  N  + 
Sbjct: 106 IIETGVAALAATHIEDAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQ 165

Query: 61  QVVTALWDQLRGVLWKKLEE-HFHTPQLREASLEEHQKVFDALVARDPVHQKVFDAL--- 116
            +  +L+     +L KK        P   E SL++H+++ DAL ARDP  QK  +A+   
Sbjct: 166 SIAGSLY-----MLGKKSRSITSRIPATLERSLQDHRQILDALKARDP--QKASEAMRHH 218

Query: 117 VARARCDARAPG 128
           + R R   R+ G
Sbjct: 219 LMRVRDAYRSAG 230


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 437,677
Number of extensions: 15702
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 3
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)