BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0032.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310569|ref|YP_003774661.1| export membrane protein SecD tr...   664   0.0  

>gi|300310569|ref|YP_003774661.1| export membrane protein SecD
           transmembrane [Herbaspirillum seropedicae SmR1]
          Length = 634

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/375 (86%), Positives = 352/375 (93%), Gaps = 2/375 (0%)

Query: 1   MNRYPLWKYVLIVIALLFGTLYTLPNFFGESPAVQISSAKSTIKVDSAVAERVQQILQQG 60
           MNRY LWKY LIV+ALLFG +YT+PNFFGESPAVQISSAKST+KV+ AVA RV QIL+QG
Sbjct: 1   MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG 60

Query: 61  SLAPESVAFDNS-SAPSVRARFANTDTQFKAKALLEKGLNTDPADPTYIVAFNLLPNTPQ 119
           +L  ESVAFDNS S PSVRARFA TD QFKAKALLEK LNTDP+DPTYIVAFNLLPNTPQ
Sbjct: 61  NLGAESVAFDNSGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ 120

Query: 120 WLQSLHAFPMYLGLDLRGGVHFLMQVDVKAVLNKRLQGLQSSVRSVLRDKNIRHNGINRN 179
           WLQSLHAFPMYLGLDLRGGVHFLMQVD+KAVLNKRLQG+Q+SVRS+LRDKNIRH+GI+R+
Sbjct: 121 WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGISRS 180

Query: 180 GDRIEILFRDADTRDKAKSALAADVSELALQDAGSGDDLKLIATLRPEALKQTQEDGVKQ 239
           GD IEI FRDADTR+KA++AL  ++ E+ L DAGSGDDLKLIATLRPEALKQTQEDGVKQ
Sbjct: 181 GDSIEISFRDADTRNKARAALG-ELQEMLLTDAGSGDDLKLIATLRPEALKQTQEDGVKQ 239

Query: 240 NISTLSKRVNELGVAEPIIQRQGADRIVVQLPGVQDVSRAKDIIGRTATLEVRMVDDSVA 299
           NISTLSKRVNELGVAEP+IQRQGADRIVV+LPGVQDVSRAKDIIGRTATLEVRMVD+SV 
Sbjct: 240 NISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESVV 299

Query: 300 RGTEETAAVPFGSELFKIGKGAPVVLYKEPVLTGDYISNASASFDENHQPSVSIDLNGDG 359
           RGTEET A+PFGSELFKIGKGAPVVL KEPVLTGDYISNASASFDENHQP+VSIDLNGDG
Sbjct: 300 RGTEETTAIPFGSELFKIGKGAPVVLNKEPVLTGDYISNASASFDENHQPAVSIDLNGDG 359

Query: 360 GRKMRDATREKVGKA 374
           GRKMR+ATR+KVGKA
Sbjct: 360 GRKMREATRDKVGKA 374


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,176,598
Number of extensions: 47985
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)