BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0030.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310570|ref|YP_003774662.1| preprotein translocase subunit ...   290   4e-80

>gi|300310570|ref|YP_003774662.1| preprotein translocase subunit
           SecF protein [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  290 bits (742), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 140/156 (89%), Positives = 149/156 (95%)

Query: 3   FEWKFAVAAVIANLHDVVIILGFFAFFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREA 62
           FEWKFAVAAVIANLHD++IILGFFAFFQWEFSLTVLAA+LAVLGYSVNESVVVFDRVREA
Sbjct: 156 FEWKFAVAAVIANLHDIIIILGFFAFFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREA 215

Query: 63  FRDRRYGKLSAPEVLNHAITSTISRTIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGIL 122
           FRDRR+GKLS PEVLNHAITST+SRT+ITHGSTEMMVL+M  FGGPTLHYFA+ALTIGIL
Sbjct: 216 FRDRRFGKLSPPEVLNHAITSTMSRTVITHGSTEMMVLAMFFFGGPTLHYFALALTIGIL 275

Query: 123 FGIYSSVFVAAAIAMWLGVKREDLIKPAKPKDETDG 158
           FGIYSSVFVAAA+AMWLGVKREDLIKP K KDE  G
Sbjct: 276 FGIYSSVFVAAALAMWLGVKREDLIKPVKVKDENGG 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 438,888
Number of extensions: 13788
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)