BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0014.p (461 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 347 1e-96 gi|300313780|ref|YP_003777872.1| dihydroxyacid dehydratase/phosp... 192 4e-50 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 108 8e-25 gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 94 2e-20 gi|300312632|ref|YP_003776724.1| dihydroxyacid dehydratase/phosp... 71 2e-13 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 347 bits (889), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 176/300 (58%), Positives = 212/300 (70%), Gaps = 4/300 (1%) Query: 127 TSLFDPIKLGDISLANRFVMAPLTRSRAVEGLKPGPLTVEYYRQRATAGLIIAEATQISP 186 + LF P++LG + L NR VMAPLTRSRA G P L EYY QRA AGLIIAEATQISP Sbjct: 8 SDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRAGAGLIIAEATQISP 67 Query: 187 MGQGYINTPGIYSAEQVSAWREVTGAVHAAGGKIVLQLWHVGRISHTSFLPGGVAPVSST 246 G+GY TPGIY+ V+AW+++T AVHA GG+I LQLWHVGRISH PG PV+ + Sbjct: 68 EGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRISHPDLQPGHALPVAPS 127 Query: 247 NRAANAKTFTTEGYSDVSTPRALRDAELPALVEDYRKAARNAIDAGFDGVEVHAANTYLL 306 + FT G+ TPRAL AELPA+VE Y+KAA+ ++ AGFDGVE+HAAN YLL Sbjct: 128 AVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQLSMQAGFDGVEIHAANGYLL 187 Query: 307 EQFLRDSVNDRSGPYGGSIQNRARLLLEVMQAVTKEIGAARTGIRLSPMTTFNDTAVDSD 366 +QFLRD N R+ YGGSI+NRARLLLEV+QAVT + + R GIRLSP++ ND A DSD Sbjct: 188 DQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSERVGIRLSPISPANDIA-DSD 246 Query: 367 PQALYNYVVEQIAPLGLAYLHVIEGETGGSRLPEGAPVKFDYAALRSRFPGAFIVNNGFD 426 P+AL++YVVEQ+ L YLHV+EG TGG P P FD LR F G +I NNG+D Sbjct: 247 PKALFSYVVEQLNRFKLVYLHVVEGATGG---PREVPGGFDLQVLRDLFKGLYIANNGYD 303 >gi|300313780|ref|YP_003777872.1| dihydroxyacid dehydratase/phosphogluconate dehydratase [Herbaspirillum seropedicae SmR1] Length = 594 Score = 192 bits (489), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 88/107 (82%), Positives = 97/107 (90%) Query: 1 MAQNLEGRESHDREVVFRFDAPLRERAGFLVLKGNLFDFAIMKTSVISDSFRSRYLSTPG 60 MA+NL+GR S+DRE+++ F APLRERAGFLVLKGNLFDFAIMKTSVIS++FR RYLSTPG Sbjct: 357 MAENLQGRASNDREMIYPFAAPLRERAGFLVLKGNLFDFAIMKTSVISETFRERYLSTPG 416 Query: 61 SEGIFECNAAVFDGSDDYHARINDPALGIDENTILVIRGAGPVGWPG 107 E IFEC A VFDGSDDYHARINDPAL IDENT+L IRGAGPVGWPG Sbjct: 417 QENIFECRAVVFDGSDDYHARINDPALKIDENTLLAIRGAGPVGWPG 463 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 119/223 (53%), Gaps = 14/223 (6%) Query: 126 MTSLFDPIKLGDISLANRFVMAPLTRSRAVEGLKPGPLTVEYYRQ--RATAGLIIAEATQ 183 M++LF P KL D+SL NR + P+ + AVEG K + +Y R AGL+I EAT Sbjct: 1 MSALFQPFKLKDVSLRNRIAVPPMCQYMAVEG-KVNDWHLSHYASIARGGAGLVIVEATA 59 Query: 184 ISPMGQGYINTPGIYSAEQVSAWREVTGAVHAAGGKIVLQLWHVGRISHTSFLPGGVAPV 243 +SP G+ GI+S A+ V A+ AAG +Q+ H GR + + G + Sbjct: 60 VSPEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHI 119 Query: 244 SSTNRAANAKTFTTEGYSDVS-------TPRALRDAELPALVEDYRKAARNAIDAGFDGV 296 + A +A+ + T S ++ P+A+ ++ + +D+ AA A +AGF+ + Sbjct: 120 A----ADDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWL 175 Query: 297 EVHAANTYLLEQFLRDSVNDRSGPYGGSIQNRARLLLEVMQAV 339 E+H A+ YL + F N R YGGS++NRAR LLE ++AV Sbjct: 176 ELHFAHGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAV 218 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 15/221 (6%) Query: 127 TSLFDPIKLGDISLANRFVMAPLTRSRAVEGLKPGPLTVEY-YRQRATAGLIIAEATQIS 185 + LF P+ L ++L NR ++P+ + A +G V R AGL++ EAT + Sbjct: 3 SHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATAVV 62 Query: 186 PMGQGYINTPGIYSAEQVSAWREVTGAVHAAGGKIVLQLWHVGRISHTSFL-----PGGV 240 G+ GI+ E ++ R +T + G +QL H GR S S L P G Sbjct: 63 AEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKS--SILRPWDGPAGS 120 Query: 241 APVSS---TNRAANAKTFTTEGYSDVSTPRALRDAELPALVEDYRKAARNAIDAGFDGVE 297 P S+ T +A +A F +GYS TP+A+ ++ ALV+ + AA+ A+ AGF +E Sbjct: 121 VPPSAGGWTPQAPSALPFD-DGYS---TPQAMSVEQIGALVQAFADAAQRALAAGFKVIE 176 Query: 298 VHAANTYLLEQFLRDSVNDRSGPYGGSIQNRARLLLEVMQA 338 +H A+ YL QFL N RS YGGS +NR R LLE+ +A Sbjct: 177 LHGAHGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRA 217 >gi|300312632|ref|YP_003776724.1| dihydroxyacid dehydratase/phosphogluconate dehydratase [Herbaspirillum seropedicae SmR1] Length = 578 Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 12/109 (11%) Query: 1 MAQNLEGRESHDREVVFRFDAPLRERAGFLVLKGNLF-DFAIMKTSVISDSFRSRYLSTP 59 + +N + + + EV+ FD P +E AG +LKGNL D A++K S + + Sbjct: 351 LWENCQDAPNWNEEVIRSFDKPFKEAAGIAILKGNLAPDGAVIKPSAATPALLKH----- 405 Query: 60 GSEGIFECNAAVFDGSDDYHARINDPALGIDENTILVIRGAGPVGWPGL 108 A VF+ SDD H RI+D L +DE +LV++ GP G+PG+ Sbjct: 406 ------RGRAVVFENSDDLHKRIDDENLDVDETCVLVLKNCGPKGYPGM 448 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,522,859 Number of extensions: 66845 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 5 Length of query: 461 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 373 Effective length of database: 1,203,190 Effective search space: 448789870 Effective search space used: 448789870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)