BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0013.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313780|ref|YP_003777872.1| dihydroxyacid dehydratase/phosp...   277   4e-76
gi|300310373|ref|YP_003774465.1| dihydroxyacid dehydratase/phosp...   108   5e-25
gi|300312632|ref|YP_003776724.1| dihydroxyacid dehydratase/phosp...   100   7e-23

>gi|300313780|ref|YP_003777872.1| dihydroxyacid
           dehydratase/phosphogluconate dehydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 594

 Score =  277 bits (709), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 128/133 (96%), Positives = 132/133 (99%)

Query: 5   HQTPRRFRSQDWFDNPDHIDMTALYLERFMNYGITAEELRSGRPIIGIAQSGSDISPCNR 64
           + TPRRFRSQDWFDNPDHIDMTALYLERFMNYGITAEELRSGRPIIGIAQSGSDISPCNR
Sbjct: 5   NATPRRFRSQDWFDNPDHIDMTALYLERFMNYGITAEELRSGRPIIGIAQSGSDISPCNR 64

Query: 65  IHLELARRVRDGIRDAGGIPMEFPLHPIFENCRRPTAAIDRNLSYLGLVEILHGYPIDAV 124
           IHLELA+RVRDGIRDAGGIPMEFPLHPIFENCRRPTAAIDRNL+YLGLVEILHGYPIDAV
Sbjct: 65  IHLELAKRVRDGIRDAGGIPMEFPLHPIFENCRRPTAAIDRNLAYLGLVEILHGYPIDAV 124

Query: 125 VLTTGCDKTTPAQ 137
           VLTTGCDKTTP+Q
Sbjct: 125 VLTTGCDKTTPSQ 137


>gi|300310373|ref|YP_003774465.1| dihydroxyacid
           dehydratase/phosphogluconate dehydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 585

 Score =  108 bits (269), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 3/135 (2%)

Query: 2   TNQHQTPRRFRSQDWFDNPDHIDMTALYLERFMNYGITAEELRSGRPIIGIAQSGSDISP 61
           +++    R  RS  WF   D      +Y     N GI   E + G+P+IGI  + S+++P
Sbjct: 3   SDKKDKSRTLRSAGWFGTADKNGF--MYRSWMKNQGIPDHEFQ-GKPVIGICNTWSELTP 59

Query: 62  CNRIHLELARRVRDGIRDAGGIPMEFPLHPIFENCRRPTAAIDRNLSYLGLVEILHGYPI 121
           CN    ++A  VR GI +AGG P+EFP+    E+  RPTA + RNL+ + + E + G PI
Sbjct: 60  CNAHFRKIAEHVRRGIIEAGGFPVEFPVFSNGESNLRPTAMLTRNLASMDVEESIRGNPI 119

Query: 122 DAVVLTTGCDKTTPA 136
           DAVVL TGCDKTTPA
Sbjct: 120 DAVVLLTGCDKTTPA 134


>gi|300312632|ref|YP_003776724.1| dihydroxyacid
           dehydratase/phosphogluconate dehydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 578

 Score =  100 bits (250), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 3/125 (2%)

Query: 12  RSQDWFDNPDHIDMTALYLERFMNYGITAEELRSGRPIIGIAQSGSDISPCNRIHLELAR 71
           RSQ WF   D      +Y     N GI  ++   GRP+IGI  + S+++PCN     LA 
Sbjct: 11  RSQAWFGRQDRDGF--IYRSWVKNRGIPHDQF-DGRPVIGICNTYSELTPCNSHFRALAE 67

Query: 72  RVRDGIRDAGGIPMEFPLHPIFENCRRPTAAIDRNLSYLGLVEILHGYPIDAVVLTTGCD 131
           +V+ GI +AGG P+EFP+  + E   RPTA + RNL+ + + E +   P+D VVL  GCD
Sbjct: 68  QVKIGIWEAGGFPLEFPVMSLGETLLRPTAMLYRNLASMDVEESIRANPLDGVVLLMGCD 127

Query: 132 KTTPA 136
           KTTPA
Sbjct: 128 KTTPA 132


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 712,833
Number of extensions: 28948
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 3
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)