BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0011.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313171|ref|YP_003777263.1| fumarylacetoacetate hydrolase f...   183   1e-47
gi|300313779|ref|YP_003777871.1| short-chain dehydrogenase [Herb...   135   3e-33
gi|300310374|ref|YP_003774466.1| dehydrogenase oxidoreductase [H...    78   6e-16

>gi|300313171|ref|YP_003777263.1| fumarylacetoacetate hydrolase
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  183 bits (464), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/128 (67%), Positives = 102/128 (79%)

Query: 1   VLAVNSCGEAVGATLGNDVNLRDIEGRSALLLGKAKDNNGSCAIGPFIRLFDERFTIDTV 60
           VLA+NS G+ VGATLGNDVNLRD EGRSALLLGKAKDNN SCA+GPFIRLFD  F+ID V
Sbjct: 215 VLAINSRGKVVGATLGNDVNLRDFEGRSALLLGKAKDNNASCAVGPFIRLFDANFSIDDV 274

Query: 61  RQAEVSLCIEGEDGFRLDGVSFMREISRDPLDLVQQTCGAHHQYPDGFMLFLGTMFSPIK 120
           R+AE+++ ++G +GF L G S M  ISRDPL LV+   G +HQYPDG +LFLGTMF+P +
Sbjct: 275 RRAELTMRVDGTEGFTLKGSSSMSMISRDPLQLVEHAIGPNHQYPDGLVLFLGTMFAPTQ 334

Query: 121 DRDAAGAG 128
           DR   G G
Sbjct: 335 DRFGPGQG 342


>gi|300313779|ref|YP_003777871.1| short-chain dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  135 bits (339), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 60/80 (75%), Positives = 70/80 (87%)

Query: 132 RDLGVHGIRVNCIIPGAVRTPRQMRLWHSPEEEAKILASQCLYERVEPHDVAALALFLAS 191
           RD G  G+RVN IIPGA+RTPRQ  LWH+PEEEAKILA+QCL  RV+PHDVAALALFL+S
Sbjct: 184 RDFGRDGVRVNAIIPGAIRTPRQTLLWHTPEEEAKILAAQCLPTRVDPHDVAALALFLSS 243

Query: 192 DSASKCSGRDYFVDAGWYGA 211
           DS +KC+GR+Y+VDAGW GA
Sbjct: 244 DSGAKCTGREYYVDAGWLGA 263


>gi|300310374|ref|YP_003774466.1| dehydrogenase oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 77.8 bits (190), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 50/77 (64%)

Query: 132 RDLGVHGIRVNCIIPGAVRTPRQMRLWHSPEEEAKILASQCLYERVEPHDVAALALFLAS 191
           RDLG H IRVN + PG V T RQ++LW   E +  I  +QCL   + P  +A + LFLA+
Sbjct: 184 RDLGPHKIRVNTVTPGWVMTERQIKLWLDEEGKKAIARNQCLQGDLLPWHLARMVLFLAA 243

Query: 192 DSASKCSGRDYFVDAGW 208
           D ++ C+ +++ VDAGW
Sbjct: 244 DDSAMCTAQEFIVDAGW 260


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 637,193
Number of extensions: 25444
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 3
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)