BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0006.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313858|ref|YP_003777950.1| NH(3)-dependent NAD(+) syntheta...   103   8e-24
gi|300311219|ref|YP_003775311.1| glutamine-dependent NAD synthet...    85   4e-18

>gi|300313858|ref|YP_003777950.1| NH(3)-dependent NAD(+) synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 565

 Score =  103 bits (257), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 22  VKVAIAQINSTVGDISGNRNKIVEFARRAAAQGADIVLTPELSLVGYPPEDLLLRQAFYA 81
           +++AIAQ N T+GD  GN    ++  +RAA  GAD+V+ PELS+ GY P DLL    F  
Sbjct: 2   LRIAIAQCNPTIGDFEGNLALHLDGLQRAAQAGADLVVFPELSICGYYPGDLLEEARFLD 61

Query: 82  KTEEALQALTAELATLKDVHVVVGHPVLKDGAR---FNAASVLLNGRITGSYHKLELPND 138
           + E  LQ +      L  +  V+G P    G     FNA   +  GRI   YHK  LP  
Sbjct: 62  RAEATLQDVIDATRRLPGLTAVIGAPRRNPGPGKPLFNALLAVREGRIVAEYHKQLLPVY 121

Query: 139 SVFDEKRYFT--PDGTPLVFDVKGTKFGINICEDTW 172
            VFD+ R+F   P+ T  V  +KG + G  ICED W
Sbjct: 122 GVFDDGRHFEAGPE-TACVLPLKGMRVGFLICEDGW 156


>gi|300311219|ref|YP_003775311.1| glutamine-dependent NAD synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 685

 Score = 85.1 bits (209), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 21/196 (10%)

Query: 13  YFLLVAIMSVKVAIAQINSTVGDISGNRNKIVEFARRAAAQGADIVLTPELSLVGYPPED 72
           +F L +    +VA+A  +  V D   N  + +  A +AAA+GA +V  PEL L  Y  ED
Sbjct: 5   FFNLYSHGFARVAVAVPDCKVADPGFNAQRTIALAEQAAARGAVLVSFPELGLSAYSCED 64

Query: 73  LLLRQAFYAKTEEALQALTAELATLKDVHVVVGHPVLKDGARFNAASVLLNGRITGSYHK 132
           L  ++A    + +ALQ++  E +      ++VG P+  D   +N A VL +GRI G   K
Sbjct: 65  LFQQRALLDASLQALQSVL-EASMRIPAALIVGLPLKVDHQLYNCAVVLHHGRILGVVPK 123

Query: 133 LELPNDSVFDEKRYFTPD-----------------GTPLVFDVKGT---KFGINICEDTW 172
             LPN S F E R F+                   G+ L+F+++     +F I ICED W
Sbjct: 124 SYLPNYSEFYEARQFSSADCAVTRSVHLLGQEVGFGSHLLFEIRNIPDFRFHIEICEDVW 183

Query: 173 FPRAPALPXACPAASI 188
            P  P+   A   A++
Sbjct: 184 VPIPPSSFAALAGATV 199


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 463,465
Number of extensions: 16691
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)