BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0004.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312226|ref|YP_003776318.1| porphyrin biosynthesis protein ...   474   e-135

>gi|300312226|ref|YP_003776318.1| porphyrin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  474 bits (1219), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/269 (86%), Positives = 252/269 (93%)

Query: 1   MRQTDRRDIWLASTDGDNSLKAARLMTTLELLVDDHQFKAALDTVDELNANGTRHIQALQ 60
           MRQ +RRDIWLAST+ D +LKAARLMT LEL VD+H FK AL+TV+ELNANGTRHIQALQ
Sbjct: 131 MRQGERRDIWLASTEVDPTLKAARLMTALELQVDEHHFKQALETVEELNANGTRHIQALQ 190

Query: 61  WALKANQQAKNWPEVLRLVQTLDKRNALHPALSNRLREMAYDALLSDRAHDAESIRRLWA 120
           WALKANQQAKNWPEVLRLVQTLDKRNALHPALSNRLREM+YDALLSDR+HDAESIR LW 
Sbjct: 191 WALKANQQAKNWPEVLRLVQTLDKRNALHPALSNRLREMSYDALLSDRSHDAESIRLLWN 250

Query: 121 EVPNADRLKPYIAARAAQAFSSRGLHDEARTLLERALAADWDDRLIRAYRDSTAEAGSPA 180
            VP+AD+LKPYIA RAAQAFSSRGLHDEAR+LLER LAADWD RL+RAYR+STAEAGSPA
Sbjct: 251 AVPSADKLKPYIAVRAAQAFSSRGLHDEARSLLERGLAADWDIRLLRAYRESTAEAGSPA 310

Query: 181 LLAQIERCEAWLAKRPTDAELALTLGMFCLRQKLWGKAQRHLEQALSDAIEPRTVRESHL 240
           LL+QIE CE+WL+K PTDAELALTLGMFCLRQKLWGKAQRHLEQALSDAIEPRTVRESHL
Sbjct: 311 LLSQIEHCESWLSKNPTDAELALTLGMFCLRQKLWGKAQRHLEQALSDAIEPRTVRESHL 370

Query: 241 SLGQLHDALDQHEQAAAHYKQCALATAIR 269
           +L QLH+ALDQ +QAAAHYKQCALATAIR
Sbjct: 371 ALAQLHEALDQPDQAAAHYKQCALATAIR 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 791,315
Number of extensions: 29511
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)