BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0002.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312227|ref|YP_003776319.1| uroporphyrin-III C-methyltransf...   316   2e-87

>gi|300312227|ref|YP_003776319.1| uroporphyrin-III
           C-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 401

 Score =  316 bits (809), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/241 (70%), Positives = 191/241 (79%), Gaps = 6/241 (2%)

Query: 1   MNELQSSPD--QNQPDAKADPGLQASMVLPSFT-PSDNGVLKKRLRLLTLLVAILAIVLV 57
           M E QS+P   + QP A    G  AS    +FT P     L++R R  T+L+ ++   L 
Sbjct: 1   MTEQQSTPQLPEPQPQASQTAGAAASQASYTFTAPDGTAALRRRQRAQTVLLLLVIAGLG 60

Query: 58  VQWWMSHSEIRGLREEVARRLQTGDR---EKXSVLKTVQESTKELQAKVSVLDSKQAESQ 114
            QWW+SH+E+R LR EVA+RLQ+GD    E   VLK VQESTKELQ++VSVLDSKQAESQ
Sbjct: 61  AQWWVSHAELRDLRSEVAQRLQSGDNSNNELKGVLKAVQESTKELQSRVSVLDSKQAESQ 120

Query: 115 SQQLALEQLYQDLSKNRDDWALSEIEEVLSTASQQLELAGNVQGALIALQNADKSLSRSD 174
           SQQLALEQ+YQDL+KNRDDWALSEIEEVLSTA QQLELAGNVQGALIALQNADKSLSRSD
Sbjct: 121 SQQLALEQMYQDLNKNRDDWALSEIEEVLSTADQQLELAGNVQGALIALQNADKSLSRSD 180

Query: 175 KPQFIAIRRAIARDQDRLKALPTVDVPGIAVRLDSIIGQIDGMPLLSDEKPVVSVTEPKK 234
           KPQFIAIRRA+ARD DRLKALPTVD+PGIAVRLDS IGQID MPLL DEKPV S +EPK 
Sbjct: 181 KPQFIAIRRALARDIDRLKALPTVDIPGIAVRLDSAIGQIDNMPLLVDEKPVESASEPKP 240

Query: 235 Q 235
           Q
Sbjct: 241 Q 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 773,042
Number of extensions: 24976
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)